Browse Element(s) Details


Os.46576.1.S1_at

Description gb:AK063117.1
DB_XREF= gi:32973135
TID=Os.46576.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (OSJNBa0062C05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E03, full insert sequence.
FL= gb:AK063117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3610011/11Nonspecific lipid-transfer protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36060Os.2611.1.S1_a_at10/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.31528.1.S1_x_at3/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.30685.1.S1_x_at2/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36070Os.46576.2.S1_x_at11/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36070Os.46576.1.S1_x_at2/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.2.S1_x_at11/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.1.S1_x_at3/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36100Os.46576.2.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36110Os.19967.1.S1_at4/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36110Os.6845.1.S1_at1/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36130OsAffx.18530.1.S1_at10/1110+18981593..18982543hypothetical protein
LOC_Os10g36134NANA10+18984726..18986038retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.5.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.2.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_x_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46576.1.S1_at--884--8291Chr10:18974205..18974229 (25 bp)
GGCTAGTAACCAAGCGGCGGTTCTT
LOC_Os10g36100
Os.46576.1.S1_at--33--2691Chr10:18974216..18974240 (25 bp)
AAGCGGCGGTTCTTGCGCTAGCTAG
LOC_Os10g36100
Os.46576.1.S1_at--261--4691Chr10:18974218..18974242 (25 bp)
GCGGCGGTTCTTGCGCTAGCTAGCT
LOC_Os10g36100
Os.46576.1.S1_at--1081--10291Chr10:18974537..18974561 (25 bp)
TTTCCCAACTGCAGCTAGGCTCCGT
LOC_Os10g36100
Os.46576.1.S1_at--1124--4471Chr10:18974566..18974590 (25 bp)
GCCGTTCACCGGTGCGGGCCATGAT
LOC_Os10g36100
Os.46576.1.S1_at--4--4431Chr10:18974583..18974607 (25 bp)
GCCATGATGTGTGGCAACATATATA
LOC_Os10g36100
Os.46576.1.S1_at--968--231Chr10:18974609..18974633 (25 bp)
ATATATGGTGTACTGCGTGCTTGAA
LOC_Os10g36100
Os.46576.1.S1_at--758--271Chr10:18974611..18974635 (25 bp)
ATATGGTGTACTGCGTGCTTGAATA
LOC_Os10g36100
Os.46576.1.S1_at--926--7731Chr10:18974615..18974639 (25 bp)
GGTGTACTGCGTGCTTGAATAAAAT
LOC_Os10g36100
Os.46576.1.S1_at--1018--6991Chr10:18974618..18974642 (25 bp)
GTACTGCGTGCTTGAATAAAATAAA
LOC_Os10g36100
Os.46576.1.S1_at--969--231Chr10:18974668..18974692 (25 bp)
ATATATGGTGTACTGTGTATTTGAA
LOC_Os10g36100
Target Sequence 
GGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTG
CTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGC
TCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAA
CGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGG
GCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATA
TATAAATATATGGTGTACTGTGTATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis