Browse Element(s) Details


Os.2611.1.S1_a_at

Description gb:AY224548.1
DB_XREF= gi:29367647
TID=Os.2611.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2611 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 24092 putative myosin mRNA, complete cds.
PROD=putative myosin
FL= gb:AY224548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3606010/11Chorion family 2 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed
LOC_Os10g36050Os.46497.2.S1_at11/1110+18932862..18934452hypothetical protein
LOC_Os10g36050Os.46497.2.S1_x_at10/1110+18932862..18934452hypothetical protein
LOC_Os10g36060Os.2611.1.S1_a_at10/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.31528.1.S1_x_at3/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.30685.1.S1_x_at2/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36070Os.46576.2.S1_x_at11/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36070Os.46576.1.S1_x_at2/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.2.S1_x_at11/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.1.S1_x_at3/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36100Os.46576.2.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2611.1.S1_a_at--772--6331Chr10:18950225..18950249 (25 bp)
GATGCTGAGATAGCTTTGCTCAACA
LOC_Os10g36060
Os.2611.1.S1_a_at--326--371Chr10:18950264..18950288 (25 bp)
ATCAAGGACCAAGTGCAGACATATT
LOC_Os10g36060
Os.2611.1.S1_a_at--972--5711Chr10:18950414..18950438 (25 bp)
GACTCTGAGAAACACAACCTTGCTT
LOC_Os10g36060
Os.2611.1.S1_a_at--674--2211Chr10:18950427..18950451 (25 bp)
ACAACCTTGCTTCCCAAGTGCTGAA
LOC_Os10g36060
Os.2611.1.S1_a_at--939--4751Chr10:18950446..18950470 (25 bp)
GCTGAAGCTTCGGAGAGCCCTTGAA
LOC_Os10g36060
Os.2611.1.S1_a_at--264--8891NONE
TGAGGACAACCACCATGCTACTTCT
NONE
Os.2611.1.S1_a_at--677--2671Chr10:18951100..18951124 (25 bp)
AAGCGCATCAAGCATGACGACGGCA
LOC_Os10g36060
Os.2611.1.S1_a_at--218--7051Chr10:18951137..18951161 (25 bp)
GTAACGTGCTGCCAAGCACCAACAG
LOC_Os10g36060
Os.2611.1.S1_a_at--515--6332Chr10:18951303..18951327 (25 bp)
GATGCAGCTCATGATCAGTCGGTAA
LOC_Os10g36060
Os.2611.1.S1_a_at--848--3831Chr10:18951384..18951408 (25 bp)
CTGCACGGGCGGTACTCGGAGATAA
LOC_Os10g36060
Os.2611.1.S1_a_at--816--9151Chr10:18951460..18951484 (25 bp)
TGCGCGCCCTGAAGAACTCCCTGAG
LOC_Os10g36060
Target Sequence 
GATGCTGAGATAGCTTTGCTCAACAAAGAACTTGCTTCAATCAAGGACCAAGTGCAGACATATTTAGAGGAGATAAACAC
TTTAAAAAGTTCAAAGAATGAAAAGGAGGAGATGATCGAGAGGCTGCAATCAGAGATTAGATCGTTGAAATTCGAGTATG
ACAACCTGAAAATTTTGATGTCCACTAATGACTCTGAGAAACACAACCTTGCTTCCCAAGTGCTGAAGCTTCGGAGAGCC
CTTGAAAGCAGGGAGGATGTGAAACAAAATGGTGTCAAATCAGATGAGGACAACCACCATGCTACTTCTAAGCGCATCAA
GCATGACGACGGCACCACCGGGAGCCGTAACGTGCTGCCAAGCACCAACAGACACAATGCAAATGGTGACTGCAATGGGC
ATGACAGGAGGGATGCAGCTCATGATCAGTCGGTAAAGGAGCTGGAAATCCTGAAGGAGAGGAACACTGCACTGGAGGAA
GAGCTCAAAGAACTGCACGGGCGGTACTCGGAGATAAGCCTGAAATTCGCGGAAGTCGAAGGCGAGAGGCAGCAGCTGGT
GATGACGGTGCGCGCCCTGAAGAACTCCCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2611.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis