Browse Element(s) Details


OsAffx.20220.1.S1_at

Description tigr:9638.m03200
TID=OsAffx.20220.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g360201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed
LOC_Os10g36050Os.46497.2.S1_at11/1110+18932862..18934452hypothetical protein
LOC_Os10g36050Os.46497.2.S1_x_at10/1110+18932862..18934452hypothetical protein
LOC_Os10g36060Os.2611.1.S1_a_at10/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.31528.1.S1_x_at3/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.30685.1.S1_x_at2/1110+18946493..18951887Chorion family 2 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20220.1.S1_at--787--531Chr10:18925178..18925202 (25 bp)
ATCCCGGCAATAGAAACTGGCAGCG
NONE
OsAffx.20220.1.S1_at--372--2571Chr10:18925192..18925216 (25 bp)
AACTGGCAGCGAATGGCTCGCAGAA
NONE
OsAffx.20220.1.S1_at--499--5291Chr10:18925202..18925226 (25 bp)
GAATGGCTCGCAGAATCCGAGACAA
NONE
OsAffx.20220.1.S1_at--306--5231Chr10:18925214..18925238 (25 bp)
GAATCCGAGACAAAGGCCCGGGCTC
NONE
OsAffx.20220.1.S1_at--981--3971Chr10:18925232..18925470 (25 bp)
CGGGCTCGGAGCACACGGCTTCACA
NONE
OsAffx.20220.1.S1_at--1136--1931Chr10:18925460..18925484 (25 bp)
ACGGCTTCACAGCTTGCTTGCTTAG
NONE
OsAffx.20220.1.S1_at--575--2151Chr10:18925468..18925492 (25 bp)
ACAGCTTGCTTGCTTAGCCTGGCAT
NONE
OsAffx.20220.1.S1_at--783--9991Chr10:18925482..18925506 (25 bp)
TAGCCTGGCATTTTGCTTTGTCGAT
NONE
OsAffx.20220.1.S1_at--238--8291Chr10:18925488..18925512 (25 bp)
GGCATTTTGCTTTGTCGATGGACGT
NONE
OsAffx.20220.1.S1_at--254--10731Chr10:18925494..18925518 (25 bp)
TTGCTTTGTCGATGGACGTGTACAT
NONE
OsAffx.20220.1.S1_at--12--8531Chr10:18925506..18925530 (25 bp)
TGGACGTGTACATCTCGGAGGAGTA
LOC_Os10g36020
Target Sequence 
ATCCCGGCAATAGAAACTGGCAGCGAATGGCTCGCAGAATCCGAGACAAAGGCCCGGGCTCGGAGCACACGGCTTCACAG
CTTGCTTGCTTAGCCTGGCATTTTGCTTTGTCGATGGACGTGTACATCTCGGAGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis