Browse Element(s) Details


Os.2597.1.S1_at

Description gb:AK103857.1
DB_XREF= gi:32989066
TID=Os.2597.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative senescence-associated protein (OSJNBb0073N24.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148O13, full insert sequence.
FL= gb:AK103857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3598011/11senescence-associated family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2597.1.S1_at--492--1551Chr10:18901490..18901514 (25 bp)
AGCTTGCAGATCTTACTCCTATGGA
LOC_Os10g35980
Os.2597.1.S1_at--397--3431Chr10:18901346..18901366 (21 bp)
CAGAGTGCGGGTACCCAGCTGTAAA
LOC_Os10g35980
Os.2597.1.S1_at--897--1611Chr10:18901330..18901354 (25 bp)
AGCTGTAAACGCTTCCTACTTTGAT
LOC_Os10g35980
Os.2597.1.S1_at--1054--5911Chr10:18901303..18901327 (25 bp)
GAGCTATCATCCAGTCAGCACGAAT
LOC_Os10g35980
Os.2597.1.S1_at--480--7031Chr10:18901264..18901288 (25 bp)
GTACAAAAACGCACGCTCTGTTCTG
LOC_Os10g35980
Os.2597.1.S1_at--1098--7691Chr10:18901086..18901110 (25 bp)
GGTGGTAGCCATCTTTAACGTCATA
LOC_Os10g35980
Os.2597.1.S1_at--729--7131Chr10:18901071..18901091 (21 bp)
GTCATACTGTTTGTCATCTTGTCTT
LOC_Os10g35980
Os.2597.1.S1_at--438--8691Chr10:18900878..18900902 (25 bp)
TGTGCGCGCCGAAACACCGGAGAGA
LOC_Os10g35980
Os.2597.1.S1_at--428--5871Chr10:18900855..18900879 (25 bp)
GAGCGACTCCAAGGTTCCTACAAGA
LOC_Os10g35980
Os.2597.1.S1_at--283--7531Chr10:18900773..18900797 (25 bp)
GTGGCATTGTTCAGTCAAGTCTCGT
LOC_Os10g35980
Os.2597.1.S1_at--284--3011Chr10:18900737..18900761 (25 bp)
AATGCAAGGGCTTTTCCTTTCTGGT
LOC_Os10g35980
Target Sequence 
AGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCC
TACTTTGATTTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCTGTTCTGTGCTA
TGATTGTGATTCTTGCANAGCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATAC
TGTTTGTCATCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCT
ACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCA
AGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis