Browse Element(s) Details


Os.9251.1.S1_at

Description gb:AK101024.1
DB_XREF= gi:32986233
TID=Os.9251.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitochondrial NAD+-dependent malic enzyme protein (OSJNBb0073N24.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150D19, full insert sequence.
FL= gb:AK058254.1 gb:AK101024.1 gb:AK070828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3596011/11NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005739cellular_componentmitochondrion
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9251.1.S1_at--745--1131Chr10:18893644..18893665 (22 bp)
AGTGCCTTGCGTCATACATCACAGA
LOC_Os10g35960
Os.9251.1.S1_at--916--5511Chr10:18893677..18893701 (25 bp)
GAAAAGGCATCCTCTTTCCATCAAT
LOC_Os10g35960
Os.9251.1.S1_at--824--7251Chr10:18893852..18893876 (25 bp)
GTCCGTGCCGCTGTTGATGAAGATC
LOC_Os10g35960
Os.9251.1.S1_at--893--7391Chr10:18893892..18893916 (25 bp)
GTGATGTAGACGCTAGGGACCTCAA
LOC_Os10g35960
Os.9251.1.S1_at--22--3871Chr10:18894017..18894038 (22 bp)
CTGAGGCGGACACAGTCGACTTTGT
LOC_Os10g35960
Os.9251.1.S1_at--405--8311Chr10:18894039..18894063 (25 bp)
GGCTCGGAAGATGTGGTACCCTATT
LOC_Os10g35960
Os.9251.1.S1_at--178--10351Chr10:18894196..18894220 (25 bp)
TTTAGCTGCGCTACTGGAGGGTAAT
LOC_Os10g35960
Os.9251.1.S1_at--798--6351Chr10:18894233..18894257 (25 bp)
GATGCCCACGTCTATGGCTATGTTA
LOC_Os10g35960
Os.9251.1.S1_at--61--8811Chr10:18894277..18894301 (25 bp)
TGTTCTGTTTTGACAGCTTCCGTCA
LOC_Os10g35960
Os.9251.1.S1_at--746--4911Chr10:18894292..18894316 (25 bp)
GCTTCCGTCATCAAACGTTGCTCAA
LOC_Os10g35960
Os.9251.1.S1_at--422--3131Chr10:18894341..18894365 (25 bp)
AATTTACATCTCGTGCTTTACTACA
LOC_Os10g35960
Target Sequence 
AGTGCCTTGCGTCATACATCACAGACGATGAAATTCGAAAAGGCATCCTCTTTCCATCAATCTCAAGTATCAGGCACATC
ACCGCACGTGTCGGCGCCGCAGTCGTCCGTGCCGCTGTTGATGAAGATCTGGCCGAGGGGCGNTGTGATGTAGACGCTAG
GGACCTCAAGAGCATGACTGAGGCGGACACAGTCGACTTTGTGGCTCGGAAGATGTGGTACCCTATTTACAGCCCCCTCG
TGAACGATAAGTGAAGCTCGATGAAGTGAAAAATCTGACGTTGCANGAANCAGATGTAGCACCTGAACAACTATCAGTCA
CATATTTGTTCAGACTTATTTTTTTTGTTGCTATTTTCATTTAGCTGCGCTACTGGAGGGTAATTCAGCAGATACCGATG
CCCACGTCTATGGCTATGTTATCACGCCACGCCATTTTTTTGTTCTGTTTTGACAGCTTCCGTCATCAAACGTTGCTCAA
TTTCAAGATTAGTTGAGCTACATAAATTTACATCTCGTGCTTTACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis