Browse Element(s) Details


Os.50632.1.S1_x_at

Description gb:AU088655
DB_XREF= gi:7378384
DB_XREF=AU088655
CLONE=S11430
TID=Os.50632.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative folylpolyglutamate synthetase (OSJNBb0073N24.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3594010/11dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein
LOC_Os10g35890NANA10+18853990..18858417hypothetical protein
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0005829cellular_componentcytosol
GO:0009570cellular_componentchloroplast stroma
GO:0004326molecular_functiontetrahydrofolylpolyglutamate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50632.1.S1_x_at--52--2471Chr10:18873111..18873135 (25 bp)
AACAAGCTTGGTTCTCATGCATCAC
LOC_Os10g35940
Os.50632.1.S1_x_at--1089--631Chr10:18873095..18873119 (25 bp)
ATGCATCACCACCTTCAGAGCGTGT
LOC_Os10g35940
Os.50632.1.S1_x_at--316--5891Chr10:18873078..18873102 (25 bp)
GAGCGTGTGCAAATCGATCTGTCAT
LOC_Os10g35940
Os.50632.1.S1_x_at--46--7491Chr10:18873031..18873055 (25 bp)
GTGGGAAGGCCTGCTTCATAGCAAT
LOC_Os10g35940
Os.50632.1.S1_x_at--223--7891Chr10:18872867..18872891 (25 bp)
GGTTCAAACTCCAGTACAGCTAGTT
LOC_Os10g35940
Os.50632.1.S1_x_at--970--10391Chr10:18872838..18872862 (25 bp)
TTTTGAATCTCTTCCATTGGCAATC
LOC_Os10g35940
Os.50632.1.S1_x_at--595--411NONE
ATCAGGTCTTAGTTACTGGCTCCCT
NONE
Os.50632.1.S1_x_at--389--8491Chr10:18872313..18872337 (25 bp)
TGGCTCCCTGCATCTTGTTGGTGAT
LOC_Os10g35940
Os.50632.1.S1_x_at--1071--151Chr10:18872083..18872107 (25 bp)
ATTTTCGTGTTTCTGCCTTTCCAGG
LOC_Os10g35940
Os.50632.1.S1_x_at--529--8271Chr10:18872060..18872084 (25 bp)
GGCAGTGTGTGCCTTGTAGTCTACT
LOC_Os10g35940
Os.50632.1.S1_x_at--474--3871Chr10:18872037..18872061 (25 bp)
CTGTTGTTCAGAAGAGTGCCACCCA
LOC_Os10g35940
Target Sequence 
AACAAGCTTGGTTCTCATGCATCACCACCTTCAGAGCGTGTGCAAATCGATCTGTCATGGCAATTATCACTTCAAAGAGT
GTGGGAAGGCCTGCTTCATAGCAATAAAGGTCTAAATGGTTCAAACTCCAGTACAGCTAGTTCTGTTTTTGAATCTCTTC
CATTGGCAATCAAATGGCTAAGGGAAACTGCTCAACAAAACCAATCTACTTCATATCAGGTCTTAGTTACTGGCTCCCTG
CATCTTGTTGGTGATGTATTGAGATTGCTCAAGGAGTAACTTCATCCAGAGTGATGCATAGTTCAGATTGAAATGGCTGC
TTGCAGTAGCACAAGCTGGCCACTACAACAATTTATGATTGGGATACAAAGCGAAACCACCNTGATTGGAACTTGGAAGA
ATTAAAGAATGAAAGTCGTCTTGATTCAGATACTAACCNACTGAAAACTTGTATTTCTCCNATTTTCGTGTTTCTGCCTT
TCCAGGCAGTGTGTGCCTTGTAGTCTACTGTTGTTCAGAAGAGTGCCACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50632.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis