Browse Element(s) Details


Os.2599.1.S1_at

Description gb:AK071258.1
DB_XREF= gi:32981281
TID=Os.2599.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Rhizobium-induced nodule development associated protein (OSJNBb0073N24.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083I09, full insert sequence.
FL= gb:AK071258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3592011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein
LOC_Os10g35890NANA10+18853990..18858417hypothetical protein
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2599.1.S1_at--554--5491Chr10:18861079..18861103 (25 bp)
GAACATTTCTCATTGCCTGCTGTTT
LOC_Os10g35920
Os.2599.1.S1_at--724--4271Chr10:18861064..18861088 (25 bp)
CCTGCTGTTTGAGATCGTGGCCAAC
LOC_Os10g35920
Os.2599.1.S1_at--933--9211Chr10:18861023..18861047 (25 bp)
TCCATGAGCTGGATGACCAAACCCT
LOC_Os10g35920
Os.2599.1.S1_at--111--8051Chr10:18860977..18861001 (25 bp)
GGAGTTCCACCACTGCCAGAGCAGA
LOC_Os10g35920
Os.2599.1.S1_at--96--931Chr10:18860917..18860941 (25 bp)
AGGCATCATGCGGTGGTACAGGTAT
LOC_Os10g35920
Os.2599.1.S1_at--73--1031Chr10:18860898..18860922 (25 bp)
AGGTATGAAGACTGGTTCTGGCGCC
LOC_Os10g35920
Os.2599.1.S1_at--411--5911Chr10:18860863..18860887 (25 bp)
GAGCTCACTTGATCTGCAAGACTAT
LOC_Os10g35920
Os.2599.1.S1_at--113--5331Chr10:18860754..18860778 (25 bp)
GAAGTTGTTTGACCAGACATTTTCA
LOC_Os10g35920
Os.2599.1.S1_at--1103--5151Chr10:18860719..18860743 (25 bp)
GCAAGCACCGAGAGGCTGTAACCTA
LOC_Os10g35920
Os.2599.1.S1_at--670--10051Chr10:18860615..18860639 (25 bp)
TAGTTTGTCTTGTCCTTGTTTGAAA
LOC_Os10g35920
Os.2599.1.S1_at--46--2891Chr10:18860592..18860616 (25 bp)
AAGGTGGCGTTTATCATCTCCATGG
LOC_Os10g35920
Target Sequence 
GAACATTTCTCATTGCCTGCTGTTTGAGATCGTGGCCAACGGGCGGAGGCAANGTGATCCATGAGCTGGATGACCAAACC
CTCNAGAAAGCTTCCCGGCNTGCGGGAGTTCCACCACTGCCAGAGCAGATCATGCCTTGCGTNGCCANGCGGATGATGGC
GGACGAAGGCATCATGCGGTGGTACAGGTATGAAGACTGGTTCTGGCGCCNGGGATGAGGTGAGCTCACTTGATCTGCAA
GACTATGGGAAGCTGTTCGATGCAGAGTGCGAGGCATTGACAGCCNGTGGAATAGATGATAATGGTCAGGAAATTAAACC
TACCATTGTAGGAAGTTGTTTGACCAGACATTTTCATAAAATCATAGCAAGCACCGAGAGGCTGTAACCTAGAGTAATAA
CCATAATAATGGTAACAATAATGTGCATGCATGGTGGTGGTGTGGGTAGCTGATGTTGTAAATGCATGAATAGTTTGTCT
TGTCCTTGTTTGAAAGGTGGCGTTTATCATCTCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis