Browse Element(s) Details


Os.2606.1.S1_x_at

Description gb:NM_197227.1
DB_XREF= gi:37535813
TID=Os.2606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2606 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative hypersensitivity-related (hsr)protein (OSJNBb0073N24.11), mRNA.
PROD=putative hypersensitivity-related (hsr)protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3595010/11benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2606.1.S1_x_at--932--8471Chr10:18885312..18885336 (25 bp)
TGGCGAGCTTCCTCATCCCGTTCAA
LOC_Os10g35950
Os.2606.1.S1_x_at--119--511Chr10:18885359..18885383 (25 bp)
ATCGTCGTGCCCATGTGCCTGCCTG
LOC_Os10g35950
Os.2606.1.S1_x_at--1027--8631Chr10:18885414..18885438 (25 bp)
TGGGCAAGCTGATGAAACCCGCCGC
LOC_Os10g35950
Os.2606.1.S1_x_at--471--10651NONE
TTCGCCATGATCAAGCGCCGGGAGG
NONE
Os.2606.1.S1_x_at--825--4071Chr10:18886533..18886557 (25 bp)
CGAGCAAGCACGACCGGGCCAACGG
LOC_Os10g35950
Os.2606.1.S1_x_at--576--7551Chr10:18886548..18886572 (25 bp)
GGGCCAACGGCGAACACCTGGTGTT
LOC_Os10g35950
Os.2606.1.S1_x_at--1081--5491Chr10:18886559..18886583 (25 bp)
GAACACCTGGTGTTCTCCAGCAGGT
LOC_Os10g35950
Os.2606.1.S1_x_at--939--8611Chr10:18886566..18886590 (25 bp)
TGGTGTTCTCCAGCAGGTGTCCCGC
LOC_Os10g35950
Os.2606.1.S1_x_at--566--8711Chr10:18886583..18886607 (25 bp)
TGTCCCGCGCCGAGAGCCAGGACGT
LOC_Os10g35950
Os.2606.1.S1_x_at--1141--7511Chr10:18886615..18886639 (25 bp)
GTGGACTACCTCCACCACATCAAGG
LOC_Os10g35950
Os.2606.1.S1_x_at--662--8391Chr10:18886665..18886689 (25 bp)
GGCGCTCGTCGCCGAATACGGCATT
LOC_Os10g35950
Target Sequence 
TGGCGAGCTTCCTCATCCCGTTCAAGAACGCCAAGGGGGAGGACGGCATCGTCGTGCCCATGTGCCTGCCTGGCCCCGCC
ATGGACAAGTTCGTCGAGGAGATGGGCAAGCTGATGAAACCCGCCGCCGCCGCCACCGCCGCGACGCGGCAGCAGCCGGC
CGACATGTTCGCCATGATCAAGCGCCGGGAGGGGCGTGGACGCCGGCGACCCGCACATCGAGGGGCTGGGGAACTGGGCG
GCGAGCAAGCACGACCGGGCCAACGGCGAACACCTGGTGTTCTCCAGCAGGTGTCCCGCGCCGAGAGCCAGGACGTCGTC
GGCGTGGACTACCTCCACCACATCAAGGCCGTCGCCGGCGACGCCGGCGGCACGGCGCTCGTCGCCGAATACGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2606.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis