Browse Element(s) Details


Os.9251.2.S1_at

Description gb:NM_197228.1
DB_XREF= gi:37535815
TID=Os.9251.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9251 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mitochondrial NAD+-dependent malic enzyme protein (OSJNBb0073N24.24), mRNA.
PROD=putative mitochondrial NAD+-dependent malicenzyme protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3596011/11NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005739cellular_componentmitochondrion
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9251.2.S1_at--131--391Chr10:18893239..18893263 (25 bp)
ATCAGCAGCTGAGTGGTAAGTTTTA
LOC_Os10g35960
Os.9251.2.S1_at--1143--6111Chr10:18893249..18893273 (25 bp)
GAGTGGTAAGTTTTATTCTGTTGTT
LOC_Os10g35960
Os.9251.2.S1_at--140--6971Chr10:18893304..18893328 (25 bp)
GTAGCTCTATTTCTTAAGATCTCAA
LOC_Os10g35960
Os.9251.2.S1_at--749--191Chr10:18893312..18893336 (25 bp)
ATTTCTTAAGATCTCAACTGCACTA
LOC_Os10g35960
Os.9251.2.S1_at--1137--6391Chr10:18893321..18893345 (25 bp)
GATCTCAACTGCACTAACAAGTACA
LOC_Os10g35960
Os.9251.2.S1_at--1115--1951Chr10:18893328..18893352 (25 bp)
ACTGCACTAACAAGTACAATTACTG
LOC_Os10g35960
Os.9251.2.S1_at--1107--7031Chr10:18893341..18893365 (25 bp)
GTACAATTACTGATGTCCAGCATAT
LOC_Os10g35960
Os.9251.2.S1_at--775--9211Chr10:18893356..18893380 (25 bp)
TCCAGCATATTAGACAGTGTGACGT
LOC_Os10g35960
Os.9251.2.S1_at--1052--10431Chr10:18893365..18893389 (25 bp)
TTAGACAGTGTGACGTAAAAAGCTT
LOC_Os10g35960
Os.9251.2.S1_at--776--2411Chr10:18893381..18893405 (25 bp)
AAAAAGCTTACACGCTTCAGCCGTA
LOC_Os10g35960
Os.9251.2.S1_at--1030--10451Chr10:18893388..18893412 (25 bp)
TTACACGCTTCAGCCGTACTTTTTG
LOC_Os10g35960
Target Sequence 
ATCAGCAGCTGAGTGGTAAGTTTTATTCTGTTGTTTGATCGGATCATATTTNCGCTTGTTGTCTTGTAGCTCTATTTCTT
AAGATCTCAACTGCACTAACAAGTACAATTACTGATGTCCAGCATATTAGACAGTGTGACGTAAAAAGCTTACACGCTTC
AGCCGTACTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9251.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis