Browse Element(s) Details


Os.46647.1.S1_at

Description gb:AU162738
DB_XREF= gi:11026137
DB_XREF=AU162738
CLONE=S21174
TID=Os.46647.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0073N24.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3600011/11Remorin, C-terminal region family protein, expressed
LOC_Os04g557601/11Protein kinase domain containing protein, expressed
LOC_Os02g037501/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed
LOC_Os10g36050Os.46497.2.S1_at11/1110+18932862..18934452hypothetical protein
LOC_Os10g36050Os.46497.2.S1_x_at10/1110+18932862..18934452hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0003677molecular_functionDNA binding
GO:0004650molecular_functionpolygalacturonase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005488molecular_functionbinding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46647.1.S1_at--594--8411Chr10:18916245..18916269 (25 bp)
GGCCGACAACAAGTCAGTAATACTA
LOC_Os10g36000
Os.46647.1.S1_at--231--9911Chr10:18916225..18916249 (25 bp)
TACTAATAGTAGCTCTTCTCTCACT
LOC_Os10g36000
Os.46647.1.S1_at--1071--10571Chr10:18916210..18916234 (25 bp)
TTCTCTCACTTCTTGCCAAGGCTGA
LOC_Os10g36000
Os.46647.1.S1_at--358--4391Chr10:18916196..18916220 (25 bp)
GCCAAGGCTGAGTTATTTTCTTCAA
LOC_Os10g36000
Os.46647.1.S1_at--567--10511Chr10:18916176..18916200 (25 bp)
TTCAACTTTGAACCGTGCTCGCTTT
LOC_Os10g36000
Os.46647.1.S1_at--1150--4794Chr04:32975165..32975184 (20 bp)
GCTCGCTTTTCATTAGCACGTTTTT
LOC_Os04g55760
Os.46647.1.S1_at--627--91Chr10:18916060..18916084 (25 bp)
ATTCCTGCATTCCAAATGAGCCCTC
LOC_Os10g36000
Os.46647.1.S1_at--833--671Chr10:18916045..18916069 (25 bp)
ATGAGCCCTCGGTTAACTGAAACTT
LOC_Os10g36000
Os.46647.1.S1_at--520--9811Chr10:18916032..18916056 (25 bp)
TAACTGAAACTTTCGCGCACAGGGC
LOC_Os10g36000
Os.46647.1.S1_at--1146--2031Chr10:18916024..18916048 (25 bp)
ACTTTCGCGCACAGGGCGGCCAAGA
LOC_Os10g36000
Os.46647.1.S1_at--656--5331Chr10:18915837..18915962 (25 bp)
GAAGTACCAAGAGTACCTGGAGAGG
LOC_Os10g36000
Target Sequence 
GGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTCTTGCCAAGGCTGAGTTATTTTCTTCAACTTTGA
ACCGTGCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTTATAAAAACATTTTATATAGAAAATAAA
TTCAAACTAGGTCGAAAGATATAAAATTCCTGCATTCCAAATGAGCCCTCGGTTAACTGAAACTTTCGCGCACAGGGCGG
CCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAG
TACCTGGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis