Browse Element(s) Details


OsAffx.12912.1.S1_at

Description tigr:9631.m01796
TID=OsAffx.12912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1826011/11hypothetical protein
LOC_Os02g312804/11hypothetical protein
LOC_Os10g360102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12912.1.S1_at--1019--1031Chr03:10213109..10213133 (25 bp)
AGGTCGCGCCCTCGTAGCCTACCGG
LOC_Os03g18260
OsAffx.12912.1.S1_at--758--4731Chr03:10212640..10212799 (25 bp)
GCTGATGGCGACGTTCCCCGTGAAA
LOC_Os03g18260
OsAffx.12912.1.S1_at--89--6231Chr03:10212637..10212796 (25 bp)
GATGGCGACGTTCCCCGTGAAAATG
LOC_Os03g18260
OsAffx.12912.1.S1_at--550--4091Chr03:10212632..10212652 (21 bp)
CGACGTTCCCCGTGAAAATGATGAC
LOC_Os03g18260
OsAffx.12912.1.S1_at--992--1871Chr03:10212630..10212652 (23 bp)
ACGTTCCCCGTGAAAATGATGACGC
LOC_Os03g18260
OsAffx.12912.1.S1_at--632--8071Chr03:10212580..10212604 (25 bp)
GGAGCAGCATACGTAGGTGGTCTCT
LOC_Os03g18260
OsAffx.12912.1.S1_at--483--1511Chr03:10212578..10212602 (25 bp)
AGCAGCATACGTAGGTGGTCTCTAC
LOC_Os03g18260
OsAffx.12912.1.S1_at--275--10094Chr10:18922693..18922714 (22 bp)
TAGGTGGTCTCTACGAGCTGTACGC
LOC_Os10g36010
OsAffx.12912.1.S1_at--700--7734Chr10:18922695..18922714 (20 bp)
GGTGGTCTCTACGAGCTGTACGCGA
LOC_Os10g36010
OsAffx.12912.1.S1_at--933--8592Chr02:18741596..18741620 (25 bp)
TGGTCTCTACGAGCTGTACGCGACG
LOC_Os02g31280
OsAffx.12912.1.S1_at--244--9493Chr02:18741599..18741623 (25 bp)
TCTCTACGAGCTGTACGCGACGTTG
LOC_Os02g31280
Target Sequence 
AGGTCGCGCCCTCGTAGCCTACCGGTTGCCCGTCGCACGGAGGGGCGGGCGGCGGACGGTGACGCCCGGGGGCGGACAGT
GGATGGCGGCGCGTGGGAGCGGGCGGTGGGCGCCGGACGGCGACGCGCGGAGGCAGGCGGTCCCGCGCCTTGAGACGCTC
AACCAGGGCGTCCACCACGTCCCCGATGCTGACCACCTGCTGGTGCCTAGCGGCGGCGCCGCCATTGTTGGCATGGCGGA
GCAGCTGCGTGGGCGATGCGGACGCCGCCATCACCGGGGAGGTGGGGACTGGGAACGGCACGGCGCGGTTGACGCCGTGG
CGGGCATGGCGCTCGCTGATGGCGACGTTCCCCGTGAAAATGATGACGCTCTTGCACCTGGAGAAGGAGACCGGGGAGCA
GCATACGTAGGTGGTCTCTACGAGCTGTACGCGACGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis