Browse Element(s) Details


Os.10803.1.S1_at

Description gb:AK119500.1
DB_XREF= gi:37989123
TID=Os.10803.1
CNT=51
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10803 (NCBI UniGene Cluster)
UG_TITLE=Pyruvate decarboxylase 2 (Pdc2) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E07, full insert sequence.
FL= gb:AK119500.1 gb:U27350.1 gb:AK101594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1822011/11Pyruvate decarboxylase isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10803.1.S1_at--131--1371Chr03:10198887..10198911 (25 bp)
AGAGCAAGCCTGTGTACCTCAGCAT
LOC_Os03g18220
Os.10803.1.S1_at--57--1551Chr03:10198867..10198891 (25 bp)
AGCATCAGCTGCAATCTCCCAGGGC
LOC_Os03g18220
Os.10803.1.S1_at--1124--871Chr03:10198377..10198401 (25 bp)
AGGCCACTGTCGAGTTCCTGAACAA
LOC_Os03g18220
Os.10803.1.S1_at--153--891Chr03:10198296..10198320 (25 bp)
AGGCCTTCGTCGACCTTGTTGATGC
LOC_Os03g18220
Os.10803.1.S1_at--700--1091Chr03:10198270..10198294 (25 bp)
AGTGGCTACGCCTACGCGGTGATGC
LOC_Os03g18220
Os.10803.1.S1_at--128--10631Chr03:10198132..10198156 (25 bp)
TTCGCAGGGCCAATCTTCAATGACT
LOC_Os03g18220
Os.10803.1.S1_at--989--351Chr03:10198063..10198087 (25 bp)
ATAATTGTGCAACCGGAGCGTGTCA
LOC_Os03g18220
Os.10803.1.S1_at--335--1611Chr03:10198047..10198071 (25 bp)
AGCGTGTCATCGTCGGGAATGGCCC
LOC_Os03g18220
Os.10803.1.S1_at--384--5311Chr03:10198001..10198025 (25 bp)
GAAGGAGTTCTTATCTGAGCTGGCT
LOC_Os03g18220
Os.10803.1.S1_at--848--471Chr03:10197989..10198013 (25 bp)
ATCTGAGCTGGCTAAGCGCGTCAAC
LOC_Os03g18220
Os.10803.1.S1_at--384--2671Chr03:10197976..10198000 (25 bp)
AAGCGCGTCAACAAGAACACCACTG
LOC_Os03g18220
Target Sequence 
AGAGCAAGCCTGTGTACCTCAGCATCAGCTGCAATCTCCCAGGGCTGCCTCACCCCACGTTTAGCCGCGACCCCGTCCCC
TTCTTCCTCGCCCCCAGGTTGAGTAACAAGATGGGTCTGGAGGCTGCGGTGGAGGCCACTGTCGAGTTCCTGAACAAGGC
GGTGAAGCCGGTGCTCGTTGGCGGCCCCAAGCTGCGTGTGGCAAAGGCAGGGAAGGCCTTCGTCGACCTTGTTGATGCCA
GTGGCTACGCCTACGCGGTGATGCCGTCGGCCAAGGGGCTCGTGCCAGAGACGCACCCCCACTTCATCGGCACCTACTGG
GGTGCCGTCAGCACGGCCTTCTGTGCCGAGATCGTCGAGTCGGCCGACGCCTACCTCTTCGCAGGGCCAATCTTCAATGA
CTACAGCTCTGTCGGCTACTCCTTCCTCCTCAAGAAGGACAAGGCCATAATTGTGCAACCGGAGCGTGTCATCGTCGGGA
ATGGCCCGGCGTTTGGGTGCGTCATGATGAAGGAGTTCTTATCTGAGCTGGCTAAGCGCGTCAACAAGAACACCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis