Browse Element(s) Details


OsAffx.25131.1.S1_at

Description tigr:9631.m01795
TID=OsAffx.25131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1825011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25131.1.S1_at--1084--9471Chr03:10210249..10210273 (25 bp)
TCTGCGACCTGTTTTATCCGGGCGG
LOC_Os03g18250
OsAffx.25131.1.S1_at--1018--4411Chr03:10210147..10210171 (25 bp)
GCCAGGCGCACGACGAGTTGCTAGA
LOC_Os03g18250
OsAffx.25131.1.S1_at--671--6051Chr03:10210133..10210157 (25 bp)
GAGTTGCTAGAGTTCCAAGCCACCC
LOC_Os03g18250
OsAffx.25131.1.S1_at--548--7271Chr03:10210105..10210129 (25 bp)
GTCCAGGCCTATTAGGACGGGAATT
LOC_Os03g18250
OsAffx.25131.1.S1_at--507--1891Chr03:10210089..10210113 (25 bp)
ACGGGAATTAGTGGACATGGCCGCC
LOC_Os03g18250
OsAffx.25131.1.S1_at--494--5331Chr03:10210058..10210082 (25 bp)
GAAGTCGCGACTGCCGCACTGGAGT
LOC_Os03g18250
OsAffx.25131.1.S1_at--325--4531Chr03:10210004..10210028 (25 bp)
GCCGCCGTAGATCACAAGGACACGG
LOC_Os03g18250
OsAffx.25131.1.S1_at--777--7371Chr03:10209980..10210004 (25 bp)
GTGACGATCGAGCTTGCTCCGGCTA
LOC_Os03g18250
OsAffx.25131.1.S1_at--1061--6231Chr03:10209932..10209956 (25 bp)
GATGGAGATCAACCGCCAACGACGA
LOC_Os03g18250
OsAffx.25131.1.S1_at--364--4411Chr03:10209905..10209929 (25 bp)
GCCACGGCCGTTTCGATCAGGAGTA
LOC_Os03g18250
OsAffx.25131.1.S1_at--157--10311Chr03:10209895..10209919 (25 bp)
TTTCGATCAGGAGTAGCGCACTACA
LOC_Os03g18250
Target Sequence 
TCTGCGACCTGTTTTATCCGGGCGGGGAGAGCGAGCTGGCCCGCGTGGTCCGGAGGTACACGGAGCTGGAGGCGCAGCAC
AGGCAGGACATGGAGAGGTGCCGCCAGGCGCACGACGAGTTGCTAGAGTTCCAAGCCACCCTCCGTCCAGGCCTATTAGG
ACGGGAATTAGTGGACATGGCCGCCGCCGTCGAAGTCGCGACTGCCGCACTGGAGTTCGACGGCGGCCAGGAGGACGACG
ATGGCGCCGCCGTAGATCACAAGGACACGGTGACGATCGAGCTTGCTCCGGCTACGACCACGGCCATCGACGACGTCGAT
GGAGATCAACCGCCAACGACGATGGCCACGGCCGTTTCGATCAGGAGTAGCGCACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis