Browse Element(s) Details


OsAffx.25130.1.S1_x_at

Description tigr:9631.m01791
TID=OsAffx.25130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1821011/11basic helix-loop-helix, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25130.1.S1_x_at--601--2751Chr03:10193854..10193878 (25 bp)
AAGAACTCTGATTCTCTCCTAGAGA
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--522--251Chr03:10193878..10193902 (25 bp)
ATATCTGATGACTTCGTTGTTCTGA
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--432--10131Chr03:10193911..10193983 (25 bp)
TATCCCAAGTGCTCCAATTGGCATC
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--1016--3171Chr03:10193974..10193998 (25 bp)
AATTGGCATCTTAGCAGCACTTCAT
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--517--5051Chr03:10193987..10194011 (25 bp)
GCAGCACTTCATATTTGCAGGCCAA
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--773--2911Chr03:10194037..10194061 (25 bp)
AAGGATGGTCTTGATTCTCTAGCAG
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--18--5351Chr03:10194139..10194279 (25 bp)
GAAGATTCATCTTTGGTTCCATCCA
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--606--6191Chr03:10194281..10194305 (25 bp)
GAGGCAATTGCACCTGCACATCATA
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--799--3471Chr03:10194309..10194333 (25 bp)
CAGGACTTCAACTCTGCCAGTTTGA
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--366--2971Chr03:10194452..10194476 (25 bp)
AATGGAGCTTCGTTGCCACAGATGC
LOC_Os03g18210
OsAffx.25130.1.S1_x_at--342--10731Chr03:10194517..10194541 (25 bp)
TTGCAAGCTGTAAATCGTCCTTCCC
LOC_Os03g18210
Target Sequence 
AAGAACTCTGATTCTCTCCTAGAGATATCTGATGACTTCGTTGTTCTGAACGACCTCTATCCCAAGTGCTCCAATTGGCA
TCTTAGCAGCACTTCATATTTGCAGGCCAAAAGGCATGTTTTGGTTGTATCTAGGAAGGATGGTCTTGATTCTCTAGCAG
ATGTCAAGAAAGAACACTTACCTTTGCTGAGGAGAATGCATTCTGCTGGAGTGAAATGGGCACAGAAGTTCCTAGAGGAA
GATTCATCTTTGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAGGACTTCAACTCTGCCAGTTTGAAGAA
CAAGAAACACTGGAACTCCTTCACCACAACATTTTTCCTTGATTCTGTTGATGTCATTGAAGAAATCGATCAGCGTGGAT
CAGCAACTATCAGCAGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCAAATATC
CCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25130.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis