Browse Element(s) Details


Os.13953.1.S1_at

Description gb:AK069970.1
DB_XREF= gi:32979994
TID=Os.13953.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039I06, full insert sequence.
FL= gb:AK069970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1818011/11Ran-binding protein 1 homolog c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18150OsAffx.12910.1.S1_at11/113+10142507..10144524Serine/threonine phosphatase type 2c, putative, expressed
LOC_Os03g18160Os.6159.1.S1_at11/113+10150832..10153545Mitochondrial carrier protein, expressed
LOC_Os03g18170Os.55415.1.S1_at11/113+10163613..10166505Protein kinase domain containing protein, expressed
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000060biological_processprotein import into nucleus, translocation
GO:0005515molecular_functionprotein binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13953.1.S1_at--557--5331Chr03:10166951..10166975 (25 bp)
GAAGTCTCCTCTACTGCAGGGTTGG
LOC_Os03g18180
Os.13953.1.S1_at--538--1331Chr03:10166838..10166862 (25 bp)
AGAGTGAAAGCACCCGCAACCTCTA
LOC_Os03g18180
Os.13953.1.S1_at--502--5151Chr03:10166823..10166847 (25 bp)
GCAACCTCTAGGCAGCTTTGATATG
LOC_Os03g18180
Os.13953.1.S1_at--596--7071Chr03:10166750..10166774 (25 bp)
GTCAAAGTTCTTCCTTTCACAAATT
LOC_Os03g18180
Os.13953.1.S1_at--1092--6031Chr03:10166679..10166703 (25 bp)
GAGTTGTATCAGTCGGGTTCTTGGT
LOC_Os03g18180
Os.13953.1.S1_at--39--7891Chr03:10166664..10166688 (25 bp)
GGTTCTTGGTTACTACACTGTTACT
LOC_Os03g18180
Os.13953.1.S1_at--564--2631Chr03:10166637..10166661 (25 bp)
AACCTTGAGTTGTTTATCCGAGATG
LOC_Os03g18180
Os.13953.1.S1_at--174--7611Chr03:10166598..10166622 (25 bp)
GGGCACAGCATGTTTGTACAATTAT
LOC_Os03g18180
Os.13953.1.S1_at--180--3891Chr03:10166514..10166538 (25 bp)
CTGTCACTCACAATTCTTATCTCTG
LOC_Os03g18180
Os.13953.1.S1_at--961--10411Chr03:10166498..10166522 (25 bp)
TTATCTCTGTCTTGCAATTATATGC
LOC_Os03g18180
Os.13953.1.S1_at--405--6271Chr03:10166473..10166497 (25 bp)
GATGTGAAGCTCTTCGCCTCTTCGG
LOC_Os03g18180
Target Sequence 
GAAGTCTCCTCTACTGCAGGGTTGGTTGAGAAGCTTTCAGTGACCGAGACNAAAAAGGAGGNAAAATGCAGAGAAAGAGG
AGACTCCTGCAGAAGAGGATAAGAAGGACGCTAAAGAGTGAAAGCACCCGCAACCTCTAGGCAGCTTTGATATGCCTGAA
GCGAGTGAAGTGTTAAATGAGCGTCATTTCATTCATTTTGTGGTCAAAGTTCTTCCTTTCACAAATTTTCATTGTGTTTT
CTTTTGGATGAATGTTTGTGCTAGGCAAAATTTGAGTTGTATCAGTCGGGTTCTTGGTTACTACACTGTTACTTAAACCT
TGAGTTGTTTATCCGAGATGGGGTGGCNGGAGTGGGGGCACAGCATGTTTGTACAATTATTTGAAGTTGCTTTTGGAATG
GGCACGGTTTGGGTTGTCCAAAATTTGGACGGTGATGCNCTGTCACTCACAATTCTTATCTCTGTCTTGCAATTATATGC
GATGTGAAGCTCTTCGCCTCTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis