Browse Element(s) Details


Os.24664.1.A1_at

Description gb:AK058372.1
DB_XREF= gi:32968390
TID=Os.24664.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G07, full insert sequence.
FL= gb:AK058372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1821011/11basic helix-loop-helix, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24664.1.A1_at--108--6571Chr03:10194142..10194166 (25 bp)
GATTCATCTTTGGTATTCAGACTCG
LOC_Os03g18210
Os.24664.1.A1_at--1099--9931Chr03:10194155..10194179 (25 bp)
TATTCAGACTCGGATACCATTCGGT
LOC_Os03g18210
Os.24664.1.A1_at--321--9431Chr03:10194164..10194280 (25 bp)
TCGGATACCATTCGGTTCCATCCAT
LOC_Os03g18210
Os.24664.1.A1_at--748--6591Chr03:10194594..10194618 (25 bp)
GATTGCACTTAGAACTCTGCGACCA
LOC_Os03g18210
Os.24664.1.A1_at--253--10431Chr03:10194602..10194626 (25 bp)
TTAGAACTCTGCGACCAATGGTCCT
LOC_Os03g18210
Os.24664.1.A1_at--128--2091Chr03:10194634..10194658 (25 bp)
ACATTTTGTGTTTCGTGCTTCCAGA
LOC_Os03g18210
Os.24664.1.A1_at--485--10831Chr03:10194639..10194663 (25 bp)
TTGTGTTTCGTGCTTCCAGAAGGAT
LOC_Os03g18210
Os.24664.1.A1_at--911--431Chr03:10194680..10194704 (25 bp)
ATCTAGTTTTTCCTTGTTATGCCTG
LOC_Os03g18210
Os.24664.1.A1_at--723--6771Chr03:10194695..10194719 (25 bp)
GTTATGCCTGTCTTGCAGAATCCTG
LOC_Os03g18210
Os.24664.1.A1_at--164--8731Chr03:10194703..10194727 (25 bp)
TGTCTTGCAGAATCCTGCCTTGTGA
LOC_Os03g18210
Os.24664.1.A1_at--886--2371Chr03:10194730..10194754 (25 bp)
AAACTGCAGTGCATCTGATCGTTAA
LOC_Os03g18210
Target Sequence 
GATTCATCTTTGGTATTCAGACTCGGATACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAGGA
CTTCAACTCTGCCAGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACAACATTTTTCCTTGATTCTGTTGATGTCA
TTGAAGAAATCGATCAGCGTGGATCAACAACTATCAGCAGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGA
TGCAGGAGTGCCCATCCAAATATCCCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTTCT
GCAGAAAGATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAGAACTCTGCGACCAATGGTCCTTCCAAGC
ACATTTTGTGTTTCGTGCTTCCAGAAGGATAGGAAATTAGGAAGGAATCTAGTTTTTCCTTGTTATGCCTGTCTTGCAGA
ATCCTGCCTTGTGANCAAACTGCAGTGCATCTGATCGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24664.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis