Browse Element(s) Details


Os.27692.1.S1_at

Description gb:AK072637.1
DB_XREF= gi:32982660
TID=Os.27692.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131F23, full insert sequence.
FL= gb:AK072637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1827010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27692.1.S1_at--207--931Chr03:10221256..10221280 (25 bp)
AGGCAAGTGTTATCAACCCAGCTAA
LOC_Os03g18270
Os.27692.1.S1_at--1000--1431Chr03:10221211..10221235 (25 bp)
AGAACGCAGCCTGAGTGGTTGCAAT
LOC_Os03g18270
Os.27692.1.S1_at--721--1091Chr03:10221198..10221222 (25 bp)
AGTGGTTGCAATGGTCCTCACCTTA
LOC_Os03g18270
Os.27692.1.S1_at--1157--9231Chr03:10221184..10221208 (25 bp)
TCCTCACCTTACAGGCCATTGTTAT
LOC_Os03g18270
Os.27692.1.S1_at--725--3351Chr03:10220533..10220557 (25 bp)
CACCCGGTAGGTGTTTGCTACACAT
LOC_Os03g18270
Os.27692.1.S1_at--1115--9851Chr03:10220515..10220539 (25 bp)
TACACATGTCACTCCTATCATTCTT
LOC_Os03g18270
Os.27692.1.S1_at--855--8031Chr03:10220390..10220414 (25 bp)
GGAGTCGCGAGTCTGTACTTGTCAA
LOC_Os03g18270
Os.27692.1.S1_at--714--3591Chr03:10220340..10220364 (25 bp)
CATTAGCACTTGGATGGTCTTACAA
LOC_Os03g18270
Os.27692.1.S1_at--162--7951Chr03:10220301..10220325 (25 bp)
GGATATGTGCCTTTTATTCTCTTAT
LOC_Os03g18270
Os.27692.1.S1_at--308--911NONE
AGGCTTATCATCTTAAAGGCTGCTA
NONE
Os.27692.1.S1_at--205--2951Chr03:10220205..10220225 (21 bp)
AAGGCTGCTATGCTAAATTGTCATT
LOC_Os03g18270
Target Sequence 
AGGCAAGTGTTATCAACCCAGCTAAGGTGAGAAGATGCATGCTCCAGAACGCAGCCTGAGTGGTTGCAATGGTCCTCACC
TTACAGGCCATTGTTATTGAGCAGCCGAAGCCCAAGGCTCCTGTTTATCAGCTAACAGAGGGAACCAACACACTATTTCA
GGATAAGCCACATGACATGCTGCCAAAAACCTGGTCATGTCAAGGACAAATCCTGACACCCGGTAGGTGTTTGCTACACA
TGTCACTCCTATCATTCTTGTTATATTGCAATTGTCAAGAGAAATTAAGCTTTGGAATAAGTGTGGTTATCTGATTTACA
TATGAGTGTGTTGGGTTGTGGGGATATTCAACAAATAATGGAGTCGCGAGTCTGTACTTGTCAAGAAGCAGCGATAGATT
CAATGGAGGCATTAGCACTTGGATGGTCTTACAAGAATTTAGTGCAATGGATATGTGCCTTTTATTCTCTTATAAAATTG
CCAGTTTGTTTGNCCTTGGAGGCTTGGACACGAAATGTTTGATGACATTAGGCTTATCATCTTAAAGGCTGCTATGCTAA
ATTGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis