Browse Element(s) Details


Os.10803.1.S2_at

Description gb:U27350.1
DB_XREF= gi:1009709
GEN=Pdc2
TID=Os.10803.1
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10803 (NCBI UniGene Cluster)
DEF=Oryza sativa pyruvate decarboxylase 2 (Pdc2) mRNA, complete cds.
PROD=pyruvate decarboxylase 2
FL= gb:AK119500.1 gb:U27350.1 gb:AK101594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1822010/11Pyruvate decarboxylase isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10803.1.S2_at--780--3231Chr03:10197593..10197617 (25 bp)
CAAGCGTGTGATTGCCTGTATTGGT
LOC_Os03g18220
Os.10803.1.S2_at--394--9711Chr03:10197444..10197468 (25 bp)
TCAACAATGATTCGCTGTGCACAGA
LOC_Os03g18220
Os.10803.1.S2_at--443--1471Chr03:10197115..10197139 (25 bp)
AGAAGGACTGCCTGTGCTTCATTGA
LOC_Os03g18220
Os.10803.1.S2_at--287--4911Chr03:10197100..10197124 (25 bp)
GCTTCATTGAGGTGATCGCGCACAA
LOC_Os03g18220
Os.10803.1.S2_at--412--7651Chr03:10197045..10197069 (25 bp)
GGGATCGAGGGTTTCTGCTGCCAAC
LOC_Os03g18220
Os.10803.1.S2_at--602--7011NONE
GTACTTAGTTGCAAGCTGGGCTCAA
NONE
Os.10803.1.S2_at--322--8751Chr03:10196954..10196978 (25 bp)
TGTAAACACTTTGCCCTTCAGTTAT
LOC_Os03g18220
Os.10803.1.S2_at--708--3652Chr04:16142077..16142100 (23 bp)
CTTCAGTTATGTTCCTTGTGTCCAT
NONE
Os.10803.1.S2_at--5--6851Chr03:10196906..10196930 (25 bp)
GTTTCTGTTCTTCCAGTTTCGGTAG
LOC_Os03g18220
Os.10803.1.S2_at--46--6851Chr03:10196891..10196915 (25 bp)
GTTTCGGTAGCTCTGTATCTACTTG
LOC_Os03g18220
Os.10803.1.S2_at--1159--7351Chr03:10196867..10196891 (25 bp)
GTGAACATCTGTTTCTCCAATCAAA
LOC_Os03g18220
Target Sequence 
CAAGCGTGTGATTGCCTGTATTGGTGATGGGAGTTTCCAGGTGACGGCACAGGATGTGTCAACAATGATTCGCTGTGCAC
AGAACAGCATAATCTTCCTGATCAACAACGGCGGGTACACCATTGAGGTGGAGATCCATGACGGTCCATACAACGTCATC
AAGAACTGGAACTACACTGGNCTTGTGGATGCCATCCACAATGGAGAGGGCAAATGCTGGACTTCTAAGGTGAAGTGCGA
GGAGGAGCTGACGGAGGCGATCGGGATGGCGCTGGGGGAGAAGAAGGACTGCCTGTGCTTCATTGAGGTGATCGCGCACA
AGGACGACACCAGCAAAGAGCTGCTGGAATGGGGATCGAGGGTTTCTGCTGCCAACTCCAGGCCACCAAATCCTCAGTAG
AAACTTTTAGTACTTAGTTGCAAGCTGGGCTCAATCATAATAATGTAAACACTTTGCCCTTCAGTTATGTTCCTTGTGTC
CATTCCCTCGGGTTTCTGTTCTTCCAGTTTCGGTAGCTCTGTATCTACTTGTGAACATCTGTTTCTCCAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10803.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis