Browse Element(s) Details


Os.11927.1.S1_x_at

Description gb:AK060680.1
DB_XREF= gi:32970698
TID=Os.11927.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C12, full insert sequence.
FL= gb:AK060680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1820011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18170Os.55415.1.S1_at11/113+10163613..10166505Protein kinase domain containing protein, expressed
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11927.1.S1_x_at--938--6211Chr03:10188909..10188933 (25 bp)
GAGGCGCCGAGCAACATGTTCGACG
LOC_Os03g18200
Os.11927.1.S1_x_at--822--731Chr03:10188924..10188948 (25 bp)
ATGTTCGACGACAGCAAGCGCGGCC
LOC_Os03g18200
Os.11927.1.S1_x_at--490--1891Chr03:10189050..10189074 (25 bp)
ACGTACCTCGTCTGGAAGCTCGGCG
LOC_Os03g18200
Os.11927.1.S1_x_at--455--9451Chr03:10189069..10189093 (25 bp)
TCGGCGCCATTCACTTCAACGAGTT
LOC_Os03g18200
Os.11927.1.S1_x_at--1086--10091Chr03:10189095..10189119 (25 bp)
TAGGCTACGTACTATCACTCACACA
LOC_Os03g18200
Os.11927.1.S1_x_at--254--5911Chr03:10189122..10189146 (25 bp)
GAGCTCGCTAGATTTGTGGGTCTTT
LOC_Os03g18200
Os.11927.1.S1_x_at--900--531Chr03:10189157..10189181 (25 bp)
ATCGCGTTGGATTTGTAGCTGCCTT
LOC_Os03g18200
Os.11927.1.S1_x_at--1113--6951Chr03:10189171..10189195 (25 bp)
GTAGCTGCCTTTTGCGGTGCTTTGA
LOC_Os03g18200
Os.11927.1.S1_x_at--1019--7771Chr03:10189186..10189210 (25 bp)
GGTGCTTTGATCAGATACTCGTGTG
LOC_Os03g18200
Os.11927.1.S1_x_at--472--7471Chr03:10189206..10189230 (25 bp)
GTGTGATATTGTACTGAACTGCCGG
LOC_Os03g18200
Os.11927.1.S1_x_at--598--8971Chr03:10189220..10189244 (25 bp)
TGAACTGCCGGCTTTGGTTTTAAGG
LOC_Os03g18200
Target Sequence 
GAGGCGCCGAGCAACATGTTCGACGACAGCAAGCGCGGCCTGCCCAAGGAAGGGTGGACGTTCGAGGCGCTGCCGTTCGG
CACCGACGTGATCGTCATCGCCGCCTCCTTCACNCTCATCACCGTCGTCATGTTCGGCACCACGTACCTCGTCTGGAAGC
TCGGCGCCATTCACTTCAACGAGTTNTAGGCTACGTACTATCACTCACACAATGAGCTCGCTAGATTTGTGGGTCTTTGG
GTGATGAAATCGCGTTGGATTTGTAGCTGCCTTTTGCGGTGCTTTGATCAGATACTCGTGTGATATTGTACTGAACTGCC
GGCTTTGGTTTTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis