Browse Element(s) Details


Os.7252.1.S1_at

Description gb:AK101057.1
DB_XREF= gi:32986266
TID=Os.7252.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021C05, full insert sequence.
FL= gb:AK101057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g181904/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18160Os.6159.1.S1_at11/113+10150832..10153545Mitochondrial carrier protein, expressed
LOC_Os03g18170Os.55415.1.S1_at11/113+10163613..10166505Protein kinase domain containing protein, expressed
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7252.1.S1_at--148--3551Chr03:10171259..10171283 (25 bp)
CATCGCTTGTCGACATGCTAAGAGA
LOC_Os03g18190
Os.7252.1.S1_at--68--7771Chr03:10171206..10171230 (25 bp)
GGTGATGCAGTCTTCAATGCAGCTA
LOC_Os03g18190
Os.7252.1.S1_at--783--7971Chr03:10171175..10171199 (25 bp)
GGATCGATCCTTTAGTAATTGCGCA
LOC_Os03g18190
Os.7252.1.S1_at--102--9751Chr03:10171160..10171184 (25 bp)
TAATTGCGCAGTTGTGGCAGGCCCT
LOC_Os03g18190
Os.7252.1.S1_at--925--8491Chr03:10171146..10171170 (25 bp)
TGGCAGGCCCTGGAGATTGGATAAT
NONE
Os.7252.1.S1_at--901--10571Chr03:10171086..10171110 (25 bp)
TTCTCCGAACAAACACTTCATCACA
NONE
Os.7252.1.S1_at--715--7471Chr03:10171029..10171053 (25 bp)
GTGGCTACTACATCGTTTTTACTGA
NONE
Os.7252.1.S1_at--23--6471Chr03:10170986..10171010 (25 bp)
GATAGTTACGACACCATGGCACCTT
NONE
Os.7252.1.S1_at--476--2411Chr03:10170925..10170949 (25 bp)
AAACACTGACTATCTGACGTCTCAA
NONE
Os.7252.1.S1_at--583--4931Chr03:10170861..10170885 (25 bp)
GCATATTCAGGGATAGCCGTTTTCT
NONE
Os.7252.1.S1_at--668--2831Chr03:10170818..10170842 (25 bp)
AAGTCCCAATACTCCTAGATCAGAT
NONE
Target Sequence 
CATCGCTTGTCGACATGCTAAGAGAGAATTTGAAAGAATGTGCAGCTCTGCATGGTGATGCAGTCTTCAATGCAGCTATC
AGCAGGATCGATCCTTTAGTAATTGCGCAGTTGTGGCAGGCCCTGGAGATTGGATAATATGTGCACCATGGCGATTCTCT
TCGCCGTTGTCCCTTCTCCGAACAAACACTTCATCACAACTCACAAGCCATACAATTTGCATGGACACATGTGGCTACTA
CATCGTTTTTACTGACATTGAAGTGTGCTGTTCGATAGTTACGACACCATGGCACCTTCAAAAAAACACTGACGTCCAAA
ATTTAGCATACATAAAACACTGACTATCTGACGTCTCAAGGATATTCCTTTCGTAGTGAATGTAACAAGTATGGGGTAGC
ATATTCAGGGATAGCCGTTTTCTTGATAGGATATACTCCCAAAGTCCCAATACTCCTAGATCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis