Browse Element(s) Details


Os.55972.1.S1_at

Description gb:AK109072.1
DB_XREF= gi:32994281
TID=Os.55972.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-G04, full insert sequence.
FL= gb:AK109072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1823011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18210OsAffx.25130.1.S1_x_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210OsAffx.25130.1.S1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18210Os.24664.1.A1_at11/113+10192525..10194796basic helix-loop-helix, putative, expressed
LOC_Os03g18220Os.10803.1.S1_at11/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18220Os.10803.1.S2_at10/113+10196830..10199779Pyruvate decarboxylase isozyme 2, putative, expressed
LOC_Os03g18230Os.55972.1.S1_at11/113+10203058..10204065expressed protein
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55972.1.S1_at--287--6031Chr03:10203527..10203551 (25 bp)
GAGAGGACCCTACCGAGATCAGCTG
LOC_Os03g18230
Os.55972.1.S1_at--555--6631Chr03:10203590..10203614 (25 bp)
GTTGTGCTGCTGTCGTCCACAGTTT
LOC_Os03g18230
Os.55972.1.S1_at--511--5411Chr03:10203636..10203660 (25 bp)
GAAGCGTGGACTTTGTCTTGACCTC
LOC_Os03g18230
Os.55972.1.S1_at--217--5691Chr03:10203644..10203668 (25 bp)
GACTTTGTCTTGACCTCGTCGACGT
LOC_Os03g18230
Os.55972.1.S1_at--360--10631Chr03:10203674..10203698 (25 bp)
TTCGTCTCGCTCACCAGAGGAGTGG
LOC_Os03g18230
Os.55972.1.S1_at--639--6271Chr03:10203872..10203896 (25 bp)
GATGTCGTCGCTGCTAGGACCGCTT
LOC_Os03g18230
Os.55972.1.S1_at--921--9891Chr03:10203910..10203934 (25 bp)
TACTCAACTCGGTTTCTCCGATCTC
LOC_Os03g18230
Os.55972.1.S1_at--885--6011Chr03:10203994..10204018 (25 bp)
GAGAGATGTACTGGCGGGACCCACT
LOC_Os03g18230
Os.55972.1.S1_at--544--8332Chr03:10204006..10204030 (25 bp)
GGCGGGACCCACTACAAGTAACTTG
LOC_Os03g18230
Os.55972.1.S1_at--571--3631Chr03:10204027..10204051 (25 bp)
CTTGCACTATGGAGTATGTAGCTTA
LOC_Os03g18230
Os.55972.1.S1_at--624--10111Chr03:10204041..10204065 (25 bp)
TATGTAGCTTACCACGTTCTTAGTC
LOC_Os03g18230
Target Sequence 
GAGAGGACCCTACCGAGATCAGCTGCTCGGCGCCGCCACCGCTCCGCTGCGCCGCTCTACTCCGTTGTGCTGCTGTCGTC
CACAGTTTCCGCCCCGACGAGGAGAAGTGGAAGCGTGGACTTTGTCTTGACCTCGTCGACGTCCATCTTCGTCTCGCTCA
CCAGAGGAGTGGTGCTGGCCGGGTCACCCGGCCGCCGGCGCCGTCGTCGCTCGGGCCACCCCGCCCGCCGCCTTCGTCAC
CGCTCGGGCCGCCCGGTGTCGTCGCCGTTGGGACCAGGTTGCCCGGCCACCCGGCGCCGTCGCCGGGCCACCCCGCCTGC
CGCCTTCGCCACTGTCGGACCGCCCGATGTCGTCGCTGCTAGGACCGCTTCACCGGCCGCCGCTACTCAACTCGGTTTCT
CCGATCTCACTTGGGGAAAGAATGAGTGGAGAGAGAGAGAGAGATTGGGAATTGAGAGATGAAAAATGAGAGATGTACTG
GCGGGACCCACTACAAGTAACTTGCACTATGGAGTATGTAGCTTACCACGTTCTTAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis