Browse Element(s) Details


OsAffx.12915.1.S1_at

Description tigr:9631.m01800
TID=OsAffx.12915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1830010/11pherophorin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12915.1.S1_at--882--2711Chr03:10235749..10235773 (25 bp)
AAGCATCGTCATTCCACGATGACAG
LOC_Os03g18300
OsAffx.12915.1.S1_at--543--6311Chr03:10235766..10235790 (25 bp)
GATGACAGGAGAGTTGCCACACCTA
LOC_Os03g18300
OsAffx.12915.1.S1_at--270--971Chr03:10235772..10235796 (25 bp)
AGGAGAGTTGCCACACCTATGGCTC
LOC_Os03g18300
OsAffx.12915.1.S1_at--281--1751Chr03:10235786..10235810 (25 bp)
ACCTATGGCTCTCAAGCGCATGCAA
LOC_Os03g18300
OsAffx.12915.1.S1_at--778--9011Chr03:10235806..10235927 (25 bp)
TGCAAGCTCTGCAGGATAAAATTGA
LOC_Os03g18300
OsAffx.12915.1.S1_at--835--6871Chr03:10235933..10235957 (25 bp)
GTATTCATAATACTGAGCGAGCAAG
LOC_Os03g18300
OsAffx.12915.1.S1_at--62--7631Chr03:10235957..10235981 (25 bp)
GGGACAGTGCAAGTGGAAGATACAA
LOC_Os03g18300
OsAffx.12915.1.S1_at--593--991Chr03:10235981..10236005 (25 bp)
AGGATCTTAAGATCCCGTGGGAATG
LOC_Os03g18300
OsAffx.12915.1.S1_at--360--4191Chr03:10235994..10236018 (25 bp)
CCCGTGGGAATGGATGCTTGACTCT
LOC_Os03g18300
OsAffx.12915.1.S1_at--250--10751NONE
TTGACTCTGGAATCATAAGCCAACT
NONE
OsAffx.12915.1.S1_at--502--7351Chr03:10236285..10236309 (25 bp)
GTGAATGCACTGAAGTCCGACCCAT
LOC_Os03g18300
Target Sequence 
AAGCATCGTCATTCCACGATGACAGGAGAGTTGCCACACCTATGGCTCTCAAGCGCATGCAAGCTCTGCAGGATAAAATT
GAACAAGGTATTCATAATACTGAGCGAGCAAGGGACAGTGCAAGTGGAAGATACAAGGATCTTAAGATCCCGTGGGAATG
GATGCTTGACTCTGGAATCATAAGCCAACTAAAGATGGCTTCATTGAAGCTAGCAAGAGAATTCATGAACCGCGTTGTGA
ATGCACTGAAGTCCGACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis