Browse Element(s) Details


Os.16499.1.S1_at

Description gb:AK110762.1
DB_XREF= gi:32995971
TID=Os.16499.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-H08, full insert sequence.
FL= gb:AK110762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g183508/11Importin-beta N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16499.1.S1_at--629--6751Chr03:10259276..10259300 (25 bp)
GTTCAAGGACTCCAAATTCCACTCG
LOC_Os03g18350
Os.16499.1.S1_at--831--2871Chr03:10259210..10259234 (25 bp)
AAGGGAAACTGCATCCTGGGTCCAG
LOC_Os03g18350
Os.16499.1.S1_at--545--2171Chr03:10259176..10259200 (25 bp)
ACACGCGTCCTGGTTTCATGAGGGA
LOC_Os03g18350
Os.16499.1.S1_at--416--3831Chr03:10259098..10259122 (25 bp)
CTGCTGGTCGTGTACTATCAGGTTA
LOC_Os03g18350
Os.16499.1.S1_at--912--6791NONE
GTTATTTTTCTTTTCCAATGCCAGG
NONE
Os.16499.1.S1_at--284--5191Chr03:10259040..10259064 (25 bp)
GAAGTGCGTTACACATTTGTCCCGT
LOC_Os03g18350
Os.16499.1.S1_at--494--6291Chr03:10258955..10258979 (25 bp)
GATGATTTTTCTACTGGCAGCCGTT
LOC_Os03g18350
Os.16499.1.S1_at--599--5071Chr03:10258939..10258963 (25 bp)
GCAGCCGTTTGCCATTCTTCAGAAA
LOC_Os03g18350
Os.16499.1.S1_at--865--8611Chr03:10258900..10258924 (25 bp)
TGGGTCTCTGTTGCGTTTTATTCAG
LOC_Os03g18350
Os.16499.1.S1_at--541--3691NONE
CTATTTGGCTTGTTGCTCTCTGAAA
NONE
Os.16499.1.S1_at--135--7051NONE
GTAAAGTCCTGTTAGCATCATCGCT
NONE
Target Sequence 
GTTCAAGGACTCCAAATTCCACTCGGAGCTCCTCGGCCAATGTTGCCAGTCTGATGATGAACAGCTAAGGGAAACTGCAT
CCTGGGTCCAGGGGGTGATCACACGCGTCCTGGTTTCATGAGGGAAGATTTCTCAAGTAAAACTGCTGGTTTCATGAGGG
AAGACTTCTCAAGTAAAACTGCTGGTCGTGTACTATCAGGTTATTTTTCTTTTCCAATGCCAGGTGAATTGTTTTAGAAG
TGCGTTACACATTTGTCCCGTTGTGTTGCAAATAGAAAACTTTTACNAAAGGCGAGAGGTTACATAACTTACATTACACA
AGATGATTTTTCTACTGGCAGCCGTTTGCCATTCTTCAGAAANTAGGCCGGTGTCCCNTGGGTCTCTGTTGCGTTTTATT
CAGTTGTCCATGTGGATCGATTGTAATCGCAGCAATGCTATTTGGCTTGTTGCTCTCTGAAATGGTAAAGTCCTGTTAGC
ATCATCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis