Browse Element(s) Details


Os.16227.1.S1_at

Description gb:AK120544.1
DB_XREF= gi:37990167
TID=Os.16227.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence.
FL= gb:AK120544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1838011/11Ubiquitin-activating enzyme E1 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0016567biological_processprotein ubiquitination
GO:0016925biological_processprotein sumoylation
GO:0005634cellular_componentnucleus
GO:0004839molecular_functionubiquitin activating enzyme activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16227.1.S1_at--596--6131Chr03:10278530..10278554 (25 bp)
GAGGGCAACATCACTGTCGCAGAAC
LOC_Os03g18380
Os.16227.1.S1_at--544--7231Chr03:10278515..10278539 (25 bp)
GTCGCAGAACTCCTCAAGTGGCTGA
LOC_Os03g18380
Os.16227.1.S1_at--251--2231Chr03:10278487..10278511 (25 bp)
ACAAGGGCCTGAGCGCGTACAGTGT
LOC_Os03g18380
Os.16227.1.S1_at--723--4691Chr03:10278457..10278481 (25 bp)
GCGGCACTTCATTGCTTTACAACAC
LOC_Os03g18380
Os.16227.1.S1_at--92--6271Chr03:10278335..10278359 (25 bp)
GATGTCGTCGTTGCCTGTGAAGATG
LOC_Os03g18380
Os.16227.1.S1_at--825--3471Chr03:10278282..10278306 (25 bp)
CATCTCCATTTACTTCCGGTAGGTA
LOC_Os03g18380
Os.16227.1.S1_at--989--1531Chr03:10278218..10278242 (25 bp)
AGCATTCGTAAGTCTCTTCGTCAGT
LOC_Os03g18380
Os.16227.1.S1_at--932--7111Chr03:10278199..10278223 (25 bp)
GTCAGTTCGCTCTTTCTATGCATTA
LOC_Os03g18380
Os.16227.1.S1_at--801--171Chr03:10278175..10278199 (25 bp)
ATTTAGTAGCCAGTGATCGCCGCAG
LOC_Os03g18380
Os.16227.1.S1_at--722--9491Chr03:10278128..10278152 (25 bp)
TCTCCTTGCCGTTTTATGTGGGTGT
LOC_Os03g18380
Os.16227.1.S1_at--952--8871Chr03:10278004..10278028 (25 bp)
TGAGGTGTTTCCCACTTTTTGAGTC
LOC_Os03g18380
Target Sequence 
GAGGGCAACATCACTGTCGCAGAACTCCTCAAGTGGCTGAGTGACAAGGGCCTGAGCGCGTACAGTGTCTCCTGCGGCAC
TTCATTGCTTTACAACACCATGTTTCCGAGACACAAGGATCGAGTGAACAAGAAGCTCGTGGATGTCGCCAAGGAGGTGG
CGAAGGTGGACGTTCCGGCATACAGGAGGCACCTGGATGTCGTCGTTGCCTGTGAAGATGATGATGGGAATGACGTCGAC
ATCCCTCTCATCTCCATTTACTTCCGGTAGGTAGGATCATTCCTGTAAAAAAAAAGAGGTGAAAATAGATTGAGCATTCG
TAAGTCTCTTCGTCAGTTCGCTCTTTCTATGCATTATTTAGTAGCCAGTGATCGCCGCAGTGTGTTGGTTGCTCGTGGCG
ATTCTCCTTGCCGTTTTATGTGGGTGTTCTCCCTTTGCTGTTGCATGCCGACTATTTGCAGGTGTGCAATGCGGCCCCAT
CTCATGGATGTTTTGTTGACTGAATGCATAATATCTGCAATTGGATTGAGGTGTTTCCCACTTTTTGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis