Browse Element(s) Details


OsAffx.25133.1.S1_at

Description tigr:9631.m01810
TID=OsAffx.25133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1839011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25133.1.S1_at--391--2511Chr03:10291736..10291760 (25 bp)
AACATTTGATCGACATCCTCAGGGA
LOC_Os03g18390
OsAffx.25133.1.S1_at--203--8091Chr03:10291758..10291782 (25 bp)
GGACCAATTGGATGATGCCCCGAAT
LOC_Os03g18390
OsAffx.25133.1.S1_at--1139--6331Chr03:10291771..10291795 (25 bp)
GATGCCCCGAATTTGAACCAGAAGA
LOC_Os03g18390
OsAffx.25133.1.S1_at--572--2931Chr03:10291855..10291879 (25 bp)
AAGGAAGCGTATGATGCCGCACCCC
LOC_Os03g18390
OsAffx.25133.1.S1_at--439--4271Chr03:10291878..10291902 (25 bp)
CCTGGGAACAGGCTTCGTCAAGAAT
LOC_Os03g18390
OsAffx.25133.1.S1_at--1008--8011Chr03:10292068..10292090 (23 bp)
GGAGGGTCTGCCCAATTACAAGATT
LOC_Os03g18390
OsAffx.25133.1.S1_at--725--2891Chr03:10292134..10292158 (25 bp)
AAGGTGCGTCCAGCGAGATCATCGA
LOC_Os03g18390
OsAffx.25133.1.S1_at--1062--1271Chr03:10292149..10292173 (25 bp)
AGATCATCGACGCTATCCATTGTGG
LOC_Os03g18390
OsAffx.25133.1.S1_at--1098--1091Chr03:10292180..10292204 (25 bp)
AGTGTACGGATGGTTCGCCTACGAC
LOC_Os03g18390
OsAffx.25133.1.S1_at--135--1871Chr03:10292200..10292224 (25 bp)
ACGACGACTCGTTCCAGGATGCCAA
LOC_Os03g18390
OsAffx.25133.1.S1_at--933--2051Chr03:10292294..10292318 (25 bp)
ACTTCTCTACGGCTATGGAGCACAG
LOC_Os03g18390
Target Sequence 
AACATTTGATCGACATCCTCAGGGACCAATTGGATGATGCCCCGAATTTGAACCAGAAGAGGCTGGTCATGATGGAGGAA
AATGCTTTCAGAATACTGAAGAACATTGGTGTCACGACAAAGGAAGCGTATGATGCCGCACCCCTGGGAACAGGCTTCGT
CAAGAATGTGGAGGGTCTGCCCAATTACAAGATTGAAAATTATCGAGTACTCTACTTGAAGAGCAACTGCTGGCACGAAG
GTGCGTCCAGCGAGATCATCGACGCTATCCATTGTGGAGGTCCAGTGTACGGATGGTTCGCCTACGACGACTCGTTCCAG
GATGCCAAGGGCGAAATTTATCGCGTCCCATCCGCACCATCGACCATGATCTCCCCGATCGTCCGAACCCATGCCCTACT
TCTCTACGGCTATGGAGCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis