Browse Element(s) Details


Os.32994.1.S1_at

Description gb:AK102156.1
DB_XREF= gi:32987365
TID=Os.32994.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086F15, full insert sequence.
FL= gb:AK072429.1 gb:AK102156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1843010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32994.1.S1_at--5--511Chr03:10313412..10313436 (25 bp)
ATCGTGATCTTAACGCTCGGAGGAT
LOC_Os03g18430
Os.32994.1.S1_at--1068--10091Chr03:10313351..10313375 (25 bp)
TATGGGCATTGTTACCCCTTGTAAT
LOC_Os03g18430
Os.32994.1.S1_at--639--6151Chr03:10313317..10313341 (25 bp)
GAGGTCACCGAGTACGAGACTTCTG
LOC_Os03g18430
Os.32994.1.S1_at--507--5991Chr03:10313302..10313326 (25 bp)
GAGACTTCTGGCTATCGATGGCTAG
LOC_Os03g18430
Os.32994.1.S1_at--485--4851NONE
GCTAGCTCCTGAGATCATTGCCGGA
NONE
Os.32994.1.S1_at--391--6051Chr03:10312584..10312608 (25 bp)
GAGATACCAAGAGACTGCCCTCATT
LOC_Os03g18430
Os.32994.1.S1_at--845--1031Chr03:10312539..10312563 (25 bp)
AGGTGCTGGGACAACAACCCTCTGA
LOC_Os03g18430
Os.32994.1.S1_at--115--6051Chr03:10312497..10312521 (25 bp)
GAGATCATCTCCATGCTGCAAAGGC
LOC_Os03g18430
Os.32994.1.S1_at--911--751Chr03:10312469..10312493 (25 bp)
ATGTCAGATAGTTTTTCTCCTTCTT
LOC_Os03g18430
Os.32994.1.S1_at--930--3571Chr03:10312421..10312445 (25 bp)
CATATCTGCTTTTGTCTGGCTGTTT
LOC_Os03g18430
Os.32994.1.S1_at--927--4731Chr03:10312403..10312427 (25 bp)
GCTGTTTGCCCCAATCATGCAGGGA
LOC_Os03g18430
Target Sequence 
ATCGTGATCTTAACGCTCGGAGGATCCTGCTCGACAGGCAAGGAAATGCGTGCCTCGGGGATATGGGCATTGTTACCCCT
TGTAATAATGCTGGTGAGGTCACCGAGTACGAGACTTCTGGCTATCGATGGCTAGCTCCTGAGATCATTGCCGGAGATCC
CGAGAGCGTGTCGGAGACCTGGATGAGCAACGTCTACAGCTACGGGATGGTGCTGTGGGAGATGGTCACAGGTGAGGAGG
CATACTCCACATACTCCCCGGTGCAGGCAGCGGTGGGGATCGCCGCATGCGGGCTGAGGCCAGAGATACCAAGAGACTGC
CCTCATTTCCTCAGGTCACTGATGACCAGGTGCTGGGACAACAACCCTCTGAAGCGCCCCCAGTTTTCAGAGATCATCTC
CATGCTGCAAAGGCAGAATGTCAGATAGTTTTTCTCCTTCTTCTTCTTCTTCTTTTCCTATGCTGCATATCTGCTTTTGT
CTGGCTGTTTGCCCCAATCATGCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis