Browse Element(s) Details


Os.16408.1.S1_at

Description gb:AK063031.1
DB_XREF= gi:32973049
TID=Os.16408.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C05, full insert sequence.
FL= gb:AK063031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1840010/11expressed protein
LOC_Os03g618401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16408.1.S1_at--644--10091Chr03:10295482..10295506 (25 bp)
TAGGCTCCCTCCAGTACAAGAAAGG
LOC_Os03g18400
Os.16408.1.S1_at--1076--6911Chr03:10294216..10294240 (25 bp)
GTATGATGTGTCAGGGCAGACCCCA
LOC_Os03g18400
Os.16408.1.S1_at--728--5131Chr03:10294185..10294209 (25 bp)
GCAAAGGTTGCTCTCGAACACTATA
LOC_Os03g18400
Os.16408.1.S1_at--138--2351Chr03:10294044..10294068 (25 bp)
AAAGCACTGGACAGCGTTTCTTCCT
LOC_Os03g18400
Os.16408.1.S1_at--333--2992Chr03:34996285..34996309 (25 bp)
AATGTCCTGACCTTGTTCCCAAGTT
LOC_Os03g61840
Os.16408.1.S1_at--36--9311NONE
TCCCAAGTTCTTCTTTGCTGAGGAA
NONE
Os.16408.1.S1_at--252--1131Chr03:10293654..10293678 (25 bp)
AGTCCAGAGGCAACACCAATTCGTG
LOC_Os03g18400
Os.16408.1.S1_at--948--3011Chr03:10293609..10293633 (25 bp)
AATGCGATCTATTATCCTGCTGCTG
LOC_Os03g18400
Os.16408.1.S1_at--622--91Chr03:10293560..10293584 (25 bp)
ATTCGTTTCATGCATTTGGTTCCCT
LOC_Os03g18400
Os.16408.1.S1_at--295--6711Chr03:10293542..10293566 (25 bp)
GTTCCCTTTGGTTTATGTTATGCAC
LOC_Os03g18400
Os.16408.1.S1_at--843--2031Chr03:10293519..10293543 (25 bp)
ACTATGGAGACTGTTGTTTCACGCA
LOC_Os03g18400
Target Sequence 
TAGGCTCCCTCCAGTACAAGAAAGGGAAGGAACATGTGTATGATGTGTCAGGGCAGACCCCAACATGCGCAAAGGTTGCT
CTCGAACACTATAACAGATCATATGAGGATGAGTATGAGATGGTTAAAGCACTGGACAGCGTTTCTTCCTTCTTCAATGG
TGTGTGGGTGCATGTAAATTTCCTTGCTAAACTCANAGGGGCCACCCAATGTCCTGACCTTGTTCCCAAGTTCTTCTTTG
CTGAGGAAGTCCAGAGGCAACACCAATTCGTGGTTGTGGGATTTGTCTGAATAATGCGATCTATTATCCTGCTGCTGGAG
GGCACCGAGGCGACAGGAAGAATTCGTTTCATGCATTTGGTTCCCTTTGGTTTATGTTATGCACTATGGAGACTGTTGTT
TCACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis