Browse Element(s) Details


Os.51213.1.S1_at

Description gb:AK066380.1
DB_XREF= gi:32976398
TID=Os.51213.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059L17, full insert sequence.
FL= gb:AK066380.1 gb:AK061955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1837011/11ser-thr protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51213.1.S1_at--438--1371Chr03:10271833..10271857 (25 bp)
AGAGCTGATTGACCCGAGCATCGGT
LOC_Os03g18370
Os.51213.1.S1_at--346--1451Chr03:10271797..10271821 (25 bp)
AGAAGCCGCGCGTTCGCTGTGCGAA
LOC_Os03g18370
Os.51213.1.S1_at--716--971Chr03:10271766..10271790 (25 bp)
AGGAGCTGCATTGATCCTGATCCTA
LOC_Os03g18370
Os.51213.1.S1_at--653--2531Chr03:10271671..10271695 (25 bp)
AACTCCGAAGGTGTCGCCGCTGTGG
LOC_Os03g18370
Os.51213.1.S1_at--10--6051Chr03:10271634..10271658 (25 bp)
GAGATCATGTCCTCCGAGAGCTAAT
LOC_Os03g18370
Os.51213.1.S1_at--50--2971Chr03:10271559..10271583 (25 bp)
AATGGCGTTCATGTCTGATGTCTCG
LOC_Os03g18370
Os.51213.1.S1_at--592--11Chr03:10271526..10271550 (25 bp)
ATTCTTTCGTTTGTCGGTTGCCGCT
LOC_Os03g18370
Os.51213.1.S1_at--285--6691Chr03:10271510..10271534 (25 bp)
GTTGCCGCTAATCTTGCTCGTGGAA
LOC_Os03g18370
Os.51213.1.S1_at--202--9011Chr03:10271453..10271477 (25 bp)
TGAATGTTTGTTTCCTGTGCATAGC
LOC_Os03g18370
Os.51213.1.S1_at--574--171Chr03:10271360..10271384 (25 bp)
ATTTTAGCTGACTCTGCAATGGACA
LOC_Os03g18370
Os.51213.1.S1_at--353--6071Chr03:10271332..10271356 (25 bp)
GAGTTCTGAGTTTCATCTTTGGCAT
LOC_Os03g18370
Target Sequence 
AGAGCTGATTGACCCGAGCATCGGTTCCTTCTCTGAAGAAGCCGCGCGTTCGCTGTGCGAAGTGGTGAGGAGCTGCATTG
ATCCTGATCCTAAGAGGAGGCCGACCATGGCGGAGGTTGCAGCTCGGATGAGGGAGATCACCGCGCTGGGTCCGGACGGA
GCAACTCCGAAGGTGTCGCCGCTGTGGTGGGCTGAGCTGGAGATCATGTCCTCCGAGAGCTAATCACTAGCTGCATCAAG
AATGGCATTTTTCTTAAAATTTTTGCGGGGAAAGAATGGCGTTCATGTCTGATGTCTCGTTCTGAAAATTCTTTCGTTTG
TCGGTTGCCGCTAATCTTGCTCGTGGAATTTGTGTTCAGGTAGAATCTTAGAAGATGTTCTGAATGTTTGTTTCCTGTGC
ATAGCTGCAGATATAGTGAGTGCTACTTTACATGTAAAAGAGTGGTTAGTTTTCAGCAGACTGAACTGCAAACATTTTAG
CTGACTCTGCAATGGACAAAAGAGTTCTGAGTTTCATCTTTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis