Browse Element(s) Details


OsAffx.12916.1.S1_at

Description tigr:9631.m01801
TID=OsAffx.12916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=fructose-6-phosphate 2-kinasefructose-2,6-bisphosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1831011/116-phosphofructo-2-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006000biological_processfructose metabolism
GO:0006499biological_processN-terminal protein myristoylation
GO:0004331molecular_functionfructose-2,6-bisphosphate 2-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12916.1.S1_at--1060--5191Chr03:10246005..10246029 (25 bp)
GCAATTTCCCTTGAATCTATGTGTT
LOC_Os03g18310
OsAffx.12916.1.S1_at--572--271Chr03:10246050..10246074 (25 bp)
ATATGGGTTCTGTTTATTGATTCTA
LOC_Os03g18310
OsAffx.12916.1.S1_at--943--6551Chr03:10246068..10246092 (25 bp)
GATTCTATGTTTCAAGCCCCTAACT
LOC_Os03g18310
OsAffx.12916.1.S1_at--359--9451Chr03:10246093..10246117 (25 bp)
TCAGGTTTCCCCTAAAAGACTATCT
LOC_Os03g18310
OsAffx.12916.1.S1_at--550--3591Chr03:10246119..10246143 (25 bp)
CATTACGGTGTATTAAATTGGCTGC
LOC_Os03g18310
OsAffx.12916.1.S1_at--228--2431Chr03:10246191..10246215 (25 bp)
AAAACTGCAATTATCTGGTCAAAAC
LOC_Os03g18310
OsAffx.12916.1.S1_at--23--1971Chr03:10246287..10246311 (25 bp)
ACTGCAATTATATCCCCTACGTATG
LOC_Os03g18310
OsAffx.12916.1.S1_at--1130--3711Chr03:10246303..10246327 (25 bp)
CTACGTATGTATGACATGCGGGCCT
LOC_Os03g18310
OsAffx.12916.1.S1_at--936--611Chr03:10246318..10246342 (25 bp)
ATGCGGGCCTGATTTGCGACAGCAT
LOC_Os03g18310
OsAffx.12916.1.S1_at--1129--4571Chr03:10246333..10246357 (25 bp)
GCGACAGCATGTGTATTTCATACGT
LOC_Os03g18310
OsAffx.12916.1.S1_at--91--2651Chr03:10246405..10246429 (25 bp)
AACCAGATTGTTGCATCTATTTGAA
LOC_Os03g18310
Target Sequence 
GCAATTTCCCTTGAATCTATGTGTTGGACAAATTATAAAATTCTAATATGGGTTCTGTTTATTGATTCTATGTTTCAAGC
CCCTAACTTCAGGTTTCCCCTAAAAGACTATCTACATTACGGTGTATTAAATTGGCTGCACAGCTTTCTAAATATTTGTA
ACAAGATTTTTTTTAGTAAATTTCACAAAACTGCAATTATCTGGTCAAAACTATCACTTTTCTACAATTTTAACAAGGTA
TTTCACAAAACTGCAACTCTAGCAAACAAATTTATTGGAAAAACTGCAATTATATCCCCTACGTATGTATGACATGCGGG
CCTGATTTGCGACAGCATGTGTATTTCATACGTGTATGACAGGTGATTTTTCAGAGATATAAAGTTGTAGTTTTCTGATA
AACCAGATTGTTGCATCTATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis