Browse Element(s) Details


OsAffx.12918.1.S1_s_at

Description tigr:9631.m01805
TID=OsAffx.12918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1834011/11hypothetical protein
LOC_Os11g3480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12918.1.S1_s_at--131--1792Chr03:10256280..10256304 (25 bp)
ACCGTCGACCAGTGCAAGAATCGCT
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--106--7232Chr03:10256283..10256307 (25 bp)
GTCGACCAGTGCAAGAATCGCTTGG
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--478--5852Chr03:10256286..10256310 (25 bp)
GACCAGTGCAAGAATCGCTTGGATT
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--952--5152Chr03:10256293..10256317 (25 bp)
GCAAGAATCGCTTGGATTACCTCAA
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--931--5252Chr03:10256297..10256321 (25 bp)
GAATCGCTTGGATTACCTCAAGAAG
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--476--2952Chr03:10256328..10256352 (25 bp)
AAGGCCGAGCGCTCCAGGTCCAAGG
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--1148--7712Chr03:10256567..10256591 (25 bp)
GGTGGCGTTGCTACCGTTGAGCTCC
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--696--4132Chr03:10256650..10256674 (25 bp)
CGCTGGATAGGCTCGCCGGAACATA
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--747--10072Chr03:10256657..10256681 (25 bp)
TAGGCTCGCCGGAACATACGAGCGG
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--177--4072Chr03:10256750..10256774 (25 bp)
CGAGATCGAGCGCATGCGGATTCTC
LOC_Os03g18340
OsAffx.12918.1.S1_s_at--629--6392Chr03:10256753..10256777 (25 bp)
GATCGAGCGCATGCGGATTCTCGTC
LOC_Os03g18340
Target Sequence 
ACCGTCGACCAGTGCAAGAATCGCTTGGATTACCTCAAGAAGCGCCTCAAGGCCGAGCGCTCCAGGTCCAAGGGGGCCCC
GGCCCCGCCGCCGCCGCCGCCCTCGGTCGATCGCCTCCGCGCGCTCCTCCGCCTCGCCCCCTCCGTTCCCCCCGGATTCA
CTTCCCGCGGCGGCGCCATGCCAAAGGTGGGAGAGGAGGAGCAGGAGGAGGAAGAGGAGAAGGCGGAGTCCTTCGCGGCT
CCTCTGCCCCGTTCCTGGCCGTCGGTGCCGAAGCGGCCGAGGACGGCGGTGGCGTTGCTACCGTTGAGCTCCTCCTCGGG
GCATCAGCACGGGGACGGAGGAGGGACGCCGTGCACGGAGGTGGCGGCGGCGCTGGATAGGCTCGCCGGAACATACGAGC
GGGTGGAGGTGGCGAAGCAGAAGGAGGCGACGCGGCTGGAGGAGCGGCGCCTGGAGGCCATGCGCGATCTCGAGATCGAG
CGCATGCGGATTCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12918.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis