Browse Element(s) Details


Os.21774.1.S1_at

Description gb:AK069285.1
DB_XREF= gi:32979309
TID=Os.21774.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011N22, full insert sequence.
FL= gb:AK069285.1 gb:AK105724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1831011/116-phosphofructo-2-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006000biological_processfructose metabolism
GO:0006499biological_processN-terminal protein myristoylation
GO:0004331molecular_functionfructose-2,6-bisphosphate 2-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21774.1.S1_at--1118--2531Chr03:10249290..10249314 (25 bp)
AACTCCCAATGCATTACTGACATCC
LOC_Os03g18310
Os.21774.1.S1_at--1147--8331Chr03:10249351..10249375 (25 bp)
GGCTGGTTCAGCTCAAAGATGGTTT
LOC_Os03g18310
Os.21774.1.S1_at--237--2911Chr03:10249408..10249432 (25 bp)
AAGGTTGGCTCCTGCTAACTAATGC
LOC_Os03g18310
Os.21774.1.S1_at--929--3011Chr03:10249428..10249452 (25 bp)
AATGCGCTCAGATAGCACTCCAAGT
LOC_Os03g18310
Os.21774.1.S1_at--528--1811Chr03:10249444..10249468 (25 bp)
ACTCCAAGTGGATTCGGGCCCTTCG
LOC_Os03g18310
Os.21774.1.S1_at--918--7551Chr03:10249459..10249483 (25 bp)
GGGCCCTTCGAATTCTAAATATGTT
LOC_Os03g18310
Os.21774.1.S1_at--384--1111Chr03:10249516..10249540 (25 bp)
AGTGACCAATGTGGGTTCCTTTGAA
LOC_Os03g18310
Os.21774.1.S1_at--1037--3431Chr03:10249546..10249570 (25 bp)
CAGTTTGCTTGTCAAACGGCCAGGT
LOC_Os03g18310
Os.21774.1.S1_at--94--10231Chr03:10249643..10249667 (25 bp)
TTAGGCGATATATTCTTACGGACGT
LOC_Os03g18310
Os.21774.1.S1_at--409--9331Chr03:10249656..10249680 (25 bp)
TCTTACGGACGTATTCTCCAGGAAA
LOC_Os03g18310
Os.21774.1.S1_at--295--9131Chr03:10249717..10249741 (25 bp)
TGCTGTGCTGATGTGCTCTGATGAA
LOC_Os03g18310
Target Sequence 
AACTCCCAATGCATTACTGACATCCATGGGAAGTAAAATTATTGGTGTGNACAATTAACATGGCTGGTTCAGCTCAAAGA
TGGTTTGACTCTCAAATTTTGAATGGATATTATGTATTAAGGTTGGCTCCTGCTAACTAATGCGCTCAGATAGCACTCCA
AGTGGATTCGGGCCCTTCGAATTCTAAATATGTTTGTTGAGGATTTGCATGTACAGCTTCAATTATAGTGACCAATGTGG
GTTCCTTTGAAAAATTCAGTTTGCTTGTCAAACGGCCAGGTGTATATGCATTTATGCATCTNCTTTCCGCTTAATGGTTG
CTTTCCAANCCTGTCTCATATCATCAAATTAGCTTAGGCGATATATTCTTACGGACGTATTCTCCAGGAAAAAGGATATG
TATTCTTACTATGTGATCAGTTGCATGTGCTGTGCTGATGTGCTCTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis