Browse Element(s) Details


OsAffx.12913.1.S1_at

Description tigr:9631.m01798
TID=OsAffx.12913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18250OsAffx.25131.1.S1_at11/113+10209643..10210388hypothetical protein
LOC_Os03g18260OsAffx.12912.1.S1_at11/113+10212530..10213441hypothetical protein
LOC_Os03g18270Os.27692.1.S1_at10/113+10217603..10223695expressed protein
LOC_Os03g18270Os.29067.1.S1_x_at7/113+10217603..10223695expressed protein
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12913.1.S1_at--387--4511Chr03:10229845..10229897 (25 bp)
GCCGATCGTCTACAAATCAGCTATG
LOC_Os03g18280
OsAffx.12913.1.S1_at--115--9871Chr03:10229899..10229923 (25 bp)
TACAGGAATTTAGAGACGGCGCAAC
LOC_Os03g18280
OsAffx.12913.1.S1_at--1135--1391Chr03:10229912..10229936 (25 bp)
AGACGGCGCAACACCTTTTCAAGGA
LOC_Os03g18280
OsAffx.12913.1.S1_at--138--2411Chr03:10229988..10230012 (25 bp)
AAACAATGTCCTCCCGGTGTATAAT
LOC_Os03g18280
OsAffx.12913.1.S1_at--645--5051Chr03:10230054..10230078 (25 bp)
GCAGCAAGACAAGAACCAGACGGAA
LOC_Os03g18280
OsAffx.12913.1.S1_at--894--1711Chr03:10230068..10230092 (25 bp)
ACCAGACGGAAGGAATGCGATCACT
LOC_Os03g18280
OsAffx.12913.1.S1_at--29--6451Chr03:10230086..10230110 (25 bp)
GATCACTGCATATGCTGCTCTGCTG
LOC_Os03g18280
OsAffx.12913.1.S1_at--58--631Chr03:10230097..10230121 (25 bp)
ATGCTGCTCTGCTGGGAAGTTTGGT
LOC_Os03g18280
OsAffx.12913.1.S1_at--489--5131Chr03:10230129..10230153 (25 bp)
GAATAGGCGGATCTTCAAAGGCAAA
LOC_Os03g18280
OsAffx.12913.1.S1_at--504--5471Chr03:10230154..10230178 (25 bp)
GAACTCTCAATGCTTCTGGCGAAAT
LOC_Os03g18280
OsAffx.12913.1.S1_at--693--4911Chr03:10230165..10230189 (25 bp)
GCTTCTGGCGAAATTCCTGGATGAA
LOC_Os03g18280
Target Sequence 
GCCGATCGTCTACAAATCAGCTATGCTACAGGAATTTAGAGACGGCGCAACACCTTTTCAAGGACTACCCGTTCACACGG
GAAATTTGGGACAAAGTAACTGCGGGGATGGAGCAAAACAATGTCCTCCCGGTGTATAATCCAGATGAGAGGCTAATTGA
TTGGTGGGAGAAGAGAACACTGCAGCAAGACAAGAACCAGACGGAAGGAATGCGATCACTGCATATGCTGCTCTGCTGGG
AAGTTTGGTGCGAAAGGAATAGGCGGATCTTCAAAGGCAAAGAACTCTCAATGCTTCTGGCGAAATTCCTGGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis