Browse Element(s) Details


OsAffx.25132.1.S1_at

Description tigr:9631.m01803
TID=OsAffx.25132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1832011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18280OsAffx.12913.1.S1_at11/113+10229273..10230246hypothetical protein
LOC_Os03g18290OsAffx.12914.1.S1_at11/113+10231735..10232630hypothetical protein
LOC_Os03g18300OsAffx.12915.1.S1_at10/113+10234420..10236731pherophorin, putative, expressed
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25132.1.S1_at--764--611Chr03:10250443..10250467 (25 bp)
ATGCGGATGGTTGATGGACTTGATC
LOC_Os03g18320
OsAffx.25132.1.S1_at--107--3971Chr03:10250440..10250464 (25 bp)
CGGATGGTTGATGGACTTGATCAGC
LOC_Os03g18320
OsAffx.25132.1.S1_at--201--831Chr03:10250437..10250461 (25 bp)
ATGGTTGATGGACTTGATCAGCGAC
LOC_Os03g18320
OsAffx.25132.1.S1_at--441--6631Chr03:10250434..10250458 (25 bp)
GTTGATGGACTTGATCAGCGACGGC
LOC_Os03g18320
OsAffx.25132.1.S1_at--542--10772Chr08:8175230..8175294 (25 bp)
TTGATGGACTTGATCAGCGACGGCA
NONE
OsAffx.25132.1.S1_at--688--8872Chr08:8175231..8175295 (25 bp)
TGATGGACTTGATCAGCGACGGCAG
NONE
OsAffx.25132.1.S1_at--168--851Chr03:10250430..10250454 (25 bp)
ATGGACTTGATCAGCGACGGCAGTG
LOC_Os03g18320
OsAffx.25132.1.S1_at--340--5692Chr08:8175276..8175300 (25 bp)
GACTTGATCAGCGACGGCAGTGGAT
NONE
OsAffx.25132.1.S1_at--529--2072Chr08:8175277..8175301 (25 bp)
ACTTGATCAGCGACGGCAGTGGATG
NONE
OsAffx.25132.1.S1_at--634--391Chr03:10250421..10250445 (25 bp)
ATCAGCGACGGCAGTGGATGCCTGG
LOC_Os03g18320
OsAffx.25132.1.S1_at--543--10071Chr03:10250369..10250393 (25 bp)
TAGTGATGGCGATGGACGGTGATGG
LOC_Os03g18320
Target Sequence 
ATGCGGATGGTTGATGGACTTGATCAGCGACGGCAGTGGATGCCTGGGGATGGCAGCGTCAATGGGAGTGGAGGTAGTGA
TGGCGATGGACGGTGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis