Browse Element(s) Details


OsAffx.3268.1.S1_x_at

Description tigr:9631.m01807
TID=OsAffx.3268.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1836011/11Ethylene-overproduction protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3268.1.S1_x_at--498--5231Chr03:10268824..10268848 (25 bp)
GAATATAAAGCATACACGGGCGCAT
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--844--9851Chr03:10268836..10268860 (25 bp)
TACACGGGCGCATCAGGGTCTGGCA
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--564--3911Chr03:10268855..10268879 (25 bp)
CTGGCACGGGTCCATTACCTGAAAA
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--443--6951Chr03:10268924..10268948 (25 bp)
GTAGCTAAAGACAGTGCATCGGCAT
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--624--851Chr03:10269002..10269026 (25 bp)
ATGGCAACACTTTTGGATCCTACAA
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--1009--951Chr03:10269026..10269050 (25 bp)
AGGACTTACCCTTACAGATACAGAG
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--38--1891Chr03:10269830..10269854 (25 bp)
ACGAGGCGATCGGAGAGCTCTCACA
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--813--1471Chr03:10269855..10269879 (25 bp)
AGCAATAGCTTTCAGGGCAGACCTC
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--1114--111Chr03:10269903..10269927 (25 bp)
ATTCTTCGACTCCATGGGCGACAAC
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--1100--2471Chr03:10269931..10269955 (25 bp)
AACACCCTGCGGGACTGCGAGGCTG
LOC_Os03g18360
OsAffx.3268.1.S1_x_at--481--7771Chr03:10269979..10270003 (25 bp)
GGTGACACCCTGGAGCTGTACAGAA
LOC_Os03g18360
Target Sequence 
GAATATAAAGCATACACGGGCGCATCAGGGTCTGGCACGGGTCCATTACCTGAAAAATAGGAAAAAGGCTGCGTATGGAG
AGATGTCTGAACTAATAAAGGTAGCTAAAGACAGTGCATCGGCATATGAAAAACGGTCGGAATATGGTGAAAGAGATGAA
GCAAGAAGTGATCTCAATATGGCAACACTTTTGGATCCTACAAGGACTTACCCTTACAGATACAGAGCAGCTGATGTTAA
TGAATCTAGGCACACATATATGTCTAGATTCATTAATATATATATGAATGTGGACAATGCTAGAAAGTCCTATAATATGA
AACGGAGGAAGTACCATTTAAAATTTCTGATGGACGAAAGCAAGGAAGACGAGGCGATCGGAGAGCTCTCACAAGCAATA
GCTTTCAGGGCAGACCTCCAGCTGCTCCATCTCCGGGCAGCATTCTTCGACTCCATGGGCGACAACGCCAACACCCTGCG
GGACTGCGAGGCTGCCCTTTGCCTGGACCCGACACACGGTGACACCCTGGAGCTGTACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3268.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis