Browse Element(s) Details


Os.18198.1.S1_at

Description gb:AK102201.1
DB_XREF= gi:32987410
TID=Os.18198.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087E17, full insert sequence.
FL= gb:AK102201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1841011/11RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18198.1.S1_at--830--4931Chr03:10300938..10300962 (25 bp)
GCTTGGTATAGAATGCTCCCTGAGG
LOC_Os03g18410
Os.18198.1.S1_at--132--3811Chr03:10300835..10300947 (25 bp)
CTCCCTGAGGTTGTTCTTCGTGAAG
LOC_Os03g18410
Os.18198.1.S1_at--839--8231Chr03:10300779..10300803 (25 bp)
GGCAAAGTGCCCAGTCAATGTTTTT
LOC_Os03g18410
Os.18198.1.S1_at--164--1371Chr03:10299803..10299827 (25 bp)
AGAGCATGCACCCTTTGTAGGCAAT
LOC_Os03g18410
Os.18198.1.S1_at--276--2531Chr03:10299727..10299751 (25 bp)
AACTACGGCGTGTCAGAGACCACTT
LOC_Os03g18410
Os.18198.1.S1_at--422--51Chr03:10299560..10299584 (25 bp)
ATTGAGTCTACTGGAGCTCTACCGC
LOC_Os03g18410
Os.18198.1.S1_at--39--3531Chr03:10299466..10299490 (25 bp)
CATGAGCTCTCTAGTGGTCACTGTA
LOC_Os03g18410
Os.18198.1.S1_at--1061--7811Chr03:10299451..10299475 (25 bp)
GGTCACTGTAGTTTTTCACGGTTAT
LOC_Os03g18410
Os.18198.1.S1_at--327--4811Chr03:10299314..10299338 (25 bp)
GCTCGGCATTGGTTTTTTGTTGTTC
LOC_Os03g18410
Os.18198.1.S1_at--933--10451Chr03:10299285..10299309 (25 bp)
TTACCATGCACCCTAGTTGCAGTTT
LOC_Os03g18410
Os.18198.1.S1_at--898--6991Chr03:10299257..10299281 (25 bp)
GTACTTGTTATTCAGGCACTACGAT
LOC_Os03g18410
Target Sequence 
GCTTGGTATAGAATGCTCCCTGAGGTTGTTCTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTG
CCCAGTCAATGTTTTTGACATNGANGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCC
TTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGTGTCAGA
GACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCNGAGATGCTGTTCACAGAGGCTGTGAGGATCCTCGA
GGAGAAGTGCGAGAGAGTGATNTCTGNACTGTCATGAGCTCTCTAGTGGTCACTGTAGTTTTTCACGGTTATATTCTGTT
GGGAGGGTGTTTGTGCTAAGATTTATCTCCTGANGAAGAGCTGAGTTGGTAATGTTTCTTATAATCTTGTCTACATCAGG
CTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTTGTTGTTCCAGTTTACCATGCACCCTAGTTGCAGTTTAC
AGTACTTGTTATTCAGGCACTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis