Browse Element(s) Details


Os.7261.1.S1_at

Description gb:AK067856.1
DB_XREF= gi:32977874
TID=Os.7261.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121D21, full insert sequence.
FL= gb:AK067856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1844011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18410Os.18198.1.S1_at11/113+10299253..10303829RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7261.1.S1_at--848--1411Chr03:10334137..10334161 (25 bp)
AGAAATTTAATCTCGCAGCAATCAG
LOC_Os03g18440
Os.7261.1.S1_at--820--2031Chr03:10334205..10334229 (25 bp)
ACTATTTGATCCGTTTTTCTGTGGG
LOC_Os03g18440
Os.7261.1.S1_at--648--8631Chr03:10334236..10334260 (25 bp)
TGGGATACACAGCTGCACTTTAGAT
LOC_Os03g18440
Os.7261.1.S1_at--581--3031Chr03:10334318..10334342 (25 bp)
AATGCCAGCAAGAACCGTTTGTGTG
LOC_Os03g18440
Os.7261.1.S1_at--1016--4231Chr03:10334332..10334356 (25 bp)
CCGTTTGTGTGAGGTTCTGTTTGCA
LOC_Os03g18440
Os.7261.1.S1_at--952--4991Chr03:10334354..10334378 (25 bp)
GCATGTTAGGTCTGTTCACTCAAGC
LOC_Os03g18440
Os.7261.1.S1_at--542--9691Chr03:10334369..10334393 (25 bp)
TCACTCAAGCTTTATGTGCCATTGT
LOC_Os03g18440
Os.7261.1.S1_at--1084--7271Chr03:10334384..10334408 (25 bp)
GTGCCATTGTTTCATAGTTTCTAGA
LOC_Os03g18440
Os.7261.1.S1_at--583--10731Chr03:10334472..10334496 (25 bp)
TTGCTTGCATGTGTGGTTTGTTCAC
LOC_Os03g18440
Os.7261.1.S1_at--906--3151Chr03:10334546..10334570 (25 bp)
AATTCGCTCGAGGTTACGCCATATT
LOC_Os03g18440
Os.7261.1.S1_at--37--2631Chr03:10334579..10334603 (25 bp)
AACCTGAGGTTAGCCAAGGGTGCCA
LOC_Os03g18440
Target Sequence 
AGAAATTTAATCTCGCAGCAATCAGAGTTCAGAAAACAGAACCATTTTGATGGGAGTACACCGAGTAAACTATTTGATCC
GTTTTTCTGTGGGGGTATGTGGGATACACAGCTGCACTTTAGATGAAGGGACTTTTTATATACGAGCTATGGATGCAATT
TTCAAGGATGAGAATGTGCTAAATGCCAGCAAGAACCGTTTGTGTGAGGTTCTGTTTGCATGTTAGGTCTGTTCACTCAA
GCTTTATGTGCCATTGTTTCATAGTTTCTAGAAGTGAAAGAAATTGAATTGTAATGTACACGGGGAGGTGCACGAAAAGA
AATTAGTGCAAGGTCTTGCTTGCATGTGTGGTTTGTTCACTAAGCTTTTTTGTGTCATTGTTTCTTGTAGTTTGAAGGGA
AACGATTGGAATTCGCTCGAGGTTACGCCATATTCTTTGGCAAACCTGAGGTTAGCCAAGGGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis