Browse Element(s) Details


OsAffx.28970.3.S1_x_at

Description tigr:9630.m03128
TID=OsAffx.28970.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3296011/11hypothetical protein
LOC_Os03g184801/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g484401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32940OsAffx.12322.1.S1_at11/112+19553842..19558982hypothetical protein
LOC_Os02g32950NANA2+19561764..19562928SELF-PRUNING protein, putative, expressed
LOC_Os02g32960OsAffx.28970.3.S1_x_at11/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.4.S1_at7/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_x_at2/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_at1/112+19578621..19579323hypothetical protein
LOC_Os02g32970Os.55369.1.S1_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32970Os.17164.1.S1_s_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32980Os.50966.1.S1_at11/112+19591678..19592747Germin-like protein subfamily 3 member 2 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0009536cellular_componentplastid
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28970.3.S1_x_at--784--951Chr02:19578682..19578706 (25 bp)
AGGACGCACGCCAAGCTGCTAGCGT
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--32--1851Chr02:19578685..19578709 (25 bp)
ACGCACGCCAAGCTGCTAGCGTACA
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--88--9211Chr02:19578712..19578736 (25 bp)
TCCACCCATGGCACCGGAAACTGGA
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--164--8511Chr02:19578720..19578744 (25 bp)
TGGCACCGGAAACTGGACCTCCGTT
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--1133--6694Chr02:19578742..19578831 (25 bp)
GTTCCTCAGCGAGCAGATCAGATCA
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--254--9571Chr02:19578859..19578883 (25 bp)
TCTTCTTTTGCTCTTTCGGTGATGC
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--856--4811Chr02:19578868..19578892 (25 bp)
GCTCTTTCGGTGATGCGGCGTCAAG
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--273--4151Chr02:19579241..19579265 (25 bp)
CGCGTTGCCGAACCGCCGGATGCTG
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--502--4511Chr02:19579247..19579271 (25 bp)
GCCGAACCGCCGGATGCTGGAGAGA
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--560--4111Chr02:19579249..19579273 (25 bp)
CGAACCGCCGGATGCTGGAGAGAGG
LOC_Os02g32960
OsAffx.28970.3.S1_x_at--1064--1791Chr02:19579252..19579276 (25 bp)
ACCGCCGGATGCTGGAGAGAGGAGA
LOC_Os02g32960
Target Sequence 
AGGACGCACGCCAAGCTGCTAGCGTACACCTCCACCCATGGCACCGGAAACTGGACCTCCGTTCCTCAGCGAGCAGATCA
GATCAAAATATGGTGTTTTTGTTTATCTCTTCTTTTGCTCTTTCGGTGATGCGGCGTCAAGGGAGGTTCGGCGGCCAGCG
ACGCCGCGGCGACCCCCCGTCCGACCTCCTCGCCAGCGTCGAGTCGGTCGCCTCCGCCACCTCCCGCAGCATCCACGTCT
CCAAGTTCTCCGTCGGCTTCCCCGACGACGACCCGGACTCCGACTTCTCGCCCGACGACCCAGACCTCCTGCGCAACCGC
CCCGTCCCCGACCGGCTACTCGTCGTCTCCGCCGGTGTCGCCGCCAACCTCCTCTTCGCCTTCCTCATCGTCTACACCCA
GGCGCTCATCGTCGGCGTCCCTGTCCAGGCGCAGCTCCCCGGCATCCTCGTCTCCGAGGTCATCCCTGGCTCCGCCGCCG
CCGGCCGGCCGCGTTGCCGAACCGCCGGATGCTGGAGAGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28970.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis