Browse Element(s) Details


OsAffx.12322.1.S1_at

Description tigr:9630.m03126
TID=OsAffx.12322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3294011/11hypothetical protein
LOC_Os08g175501/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32880Os.46692.1.S1_at11/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32880OsAffx.26549.1.S1_at1/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32890NANA2+19530487..19532073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32900Os.25164.1.A1_at5/112+19534364..19535887hypothetical protein
LOC_Os02g32910NANA2+19536470..19537240hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_x_at10/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_at9/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.22604.1.S1_x_at2/112+19541528..19542661hypothetical protein
LOC_Os02g32930Os.51859.1.S1_at10/112+19543869..19550278Sodium Bile acid symporter family protein, expressed
LOC_Os02g32940OsAffx.12322.1.S1_at11/112+19553842..19558982hypothetical protein
LOC_Os02g32950NANA2+19561764..19562928SELF-PRUNING protein, putative, expressed
LOC_Os02g32960OsAffx.28970.3.S1_x_at11/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.4.S1_at7/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_x_at2/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_at1/112+19578621..19579323hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12322.1.S1_at--294--2971Chr02:19556416..19556438 (23 bp)
AATGGCAGCCACATACACGGCCGTG
LOC_Os02g32940
OsAffx.12322.1.S1_at--599--2671Chr02:19556343..19556367 (25 bp)
AAGCCCATGTGTCGATACGCGATCG
LOC_Os02g32940
OsAffx.12322.1.S1_at--498--10591Chr02:19556287..19556311 (25 bp)
TTCTCCTCCTACAGGGTCACTGGAA
LOC_Os02g32940
OsAffx.12322.1.S1_at--1116--10491Chr02:19555441..19555900 (25 bp)
TTCACAATACCCGTGTTAGCAGCTA
LOC_Os02g32940
OsAffx.12322.1.S1_at--543--8111Chr02:19555398..19555422 (25 bp)
GGACTGTCAAAGCTATGCTCCACAT
LOC_Os02g32940
OsAffx.12322.1.S1_at--978--4611Chr02:19555353..19555377 (25 bp)
GCGAGATCCATGTTCTCTTTGTGTA
LOC_Os02g32940
OsAffx.12322.1.S1_at--545--3671Chr02:19555337..19555361 (25 bp)
CTTTGTGTATCTTTGTCCCGTTAGA
LOC_Os02g32940
OsAffx.12322.1.S1_at--391--6311Chr02:19555121..19555145 (25 bp)
GATGCTTTGTAAGCGGATCCCGCCT
LOC_Os02g32940
OsAffx.12322.1.S1_at--1118--7372Chr06:1016051..1016159 (25 bp)
GTGAGCTTCCAAGTGATTCCATCAT
NONE
OsAffx.12322.1.S1_at--22--6591Chr02:19555063..19555087 (25 bp)
GATTCCATCATGTTTGTCGGCAGCA
LOC_Os02g32940
OsAffx.12322.1.S1_at--710--8512Chr08:10733060..10733079 (20 bp)
TGGAACTATTTCTACTGGCAACCTA
LOC_Os08g17550
Target Sequence 
AATGGCAGCCACATACACGGCCGTGCAAGCCCATGTGTCGATACGCGATCGTGGTACAGCGGGCAGCGGCGAGCCCTTCT
TTTTCTCCTCCTACAGGGTCACTGGAAACAGGGCACCGACGCGTCCATGTCGCGGCACCCGCGCCCCCACGGGCCACGGA
CCGGAGGATGATAAATACTACTTGCTACATTTCACAATACCCGTGTTAGCAGCTAACGCCTTCCACCACTCATGGACTGT
CAAAGCTATGCTCCACATTATCAGTTTGATCTGCTCAAGCGAGATCCATGTTCTCTTTGTGTATCTTTGTCCCGTTAGAA
GATGGAAGGACATCACCAAGAGCCAAAAACGATGCTTTGTAAGCGGATCCCGCCTTATACTCCCCATGGCTTGTGTGAGC
TTCCAAGTGATTCCATCATGTTTGTCGGCAGCAAGGTTCAAAGAAATTTCTTTTCTCAGCATAGTTTTATGGAACTATTT
CTACTGGCAACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis