Browse Element(s) Details


Os.51859.1.S1_at

Description gb:AK064103.1
DB_XREF= gi:32974121
TID=Os.51859.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B12, full insert sequence.
FL= gb:AK064103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3293010/11Sodium Bile acid symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32880Os.46692.1.S1_at11/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32880OsAffx.26549.1.S1_at1/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32890NANA2+19530487..19532073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32900Os.25164.1.A1_at5/112+19534364..19535887hypothetical protein
LOC_Os02g32910NANA2+19536470..19537240hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_x_at10/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_at9/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.22604.1.S1_x_at2/112+19541528..19542661hypothetical protein
LOC_Os02g32930Os.51859.1.S1_at10/112+19543869..19550278Sodium Bile acid symporter family protein, expressed
LOC_Os02g32940OsAffx.12322.1.S1_at11/112+19553842..19558982hypothetical protein
LOC_Os02g32950NANA2+19561764..19562928SELF-PRUNING protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51859.1.S1_at--1154--7091NONE
GTCACTGTTGGAGTGCTTTTGCACT
NONE
Os.51859.1.S1_at--474--9031Chr02:19548963..19548987 (25 bp)
TGCACTTTGCTCTGTTGGCTTTCAA
LOC_Os02g32930
Os.51859.1.S1_at--1127--5051Chr02:19548992..19549016 (25 bp)
GCAGCATTGCATATCTTGTCACGTC
LOC_Os02g32930
Os.51859.1.S1_at--902--6171Chr02:19549026..19549050 (25 bp)
GAGGAGTGTCTGTCTTTGCAAGGAA
LOC_Os02g32930
Os.51859.1.S1_at--41--4811Chr02:19549058..19549082 (25 bp)
GCTCGAGCTGTCATTTTAGTGGCCA
LOC_Os02g32930
Os.51859.1.S1_at--894--2391Chr02:19549771..19549795 (25 bp)
AAACATTGCCAGTGCTGGTTGCCGT
LOC_Os02g32930
Os.51859.1.S1_at--635--7311Chr02:19549813..19549837 (25 bp)
GTGCTCTCGGAGAATCAGGGTTGCT
LOC_Os02g32930
Os.51859.1.S1_at--968--3891Chr02:19549836..19549860 (25 bp)
CTGGTAATCCCATGTGTTGCTGCAC
LOC_Os02g32930
Os.51859.1.S1_at--63--7731Chr02:19549977..19550001 (25 bp)
GGTGGCGCCAAAGAGATCAACAATT
LOC_Os02g32930
Os.51859.1.S1_at--672--2571Chr02:19550074..19550098 (25 bp)
AACGATGCCCTTTGAGTTTACCGCA
LOC_Os02g32930
Os.51859.1.S1_at--83--8071Chr02:19550175..19550199 (25 bp)
GGAGCACTTTCTGTTATGCATCAAT
LOC_Os02g32930
Target Sequence 
GTCACTGTTGGAGTGCTTTTGCACTTTGCTCTGTTGGCTTTCAATGCTGCAGCATTGCATATCTTGTCACGTCTTGAACA
AAGAGGAGTGTCTGTCTTTGCAAGGAATGAGTATGCTCGAGCTGTCATTTTAGTGGCCAGTCAGAAAACATTGCCAGTGC
TGGTTGCCGTGGTTGAGCAGCTTGGAGGTGCTCTCGGAGAATCAGGGTTGCTGGTAATCCCATGTGTTGCTGCACATATT
AACCAGATTATTATCGACTCTATCATAGTAAATTGGTGGCGCCAAAGAGATCAACAATTTGCTAATGCAAAATAAATTCA
AAATGGGTAAAACAAAAAAANTAAGTAGCAAGTAACATAGAATCGTTTGGCAACGATGCCCTTTGAGTTTACCGCATATT
AGTTTTTTATGATTCCGTAGGAAACAACAATGAAACTATTTTTGTGTAGAAAGTTCATTGAGTTGCTTCCNTGGAGCACT
TTCTGTTATGCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis