Browse Element(s) Details


Os.25164.1.A1_at

Description gb:CA759275
DB_XREF= gi:25803314
DB_XREF=BR060012B10C03.ab1
CLONE=BR060012B10C03.ab1
TID=Os.25164.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.25164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0073L01.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2225011/11expressed protein
LOC_Os11g033208/11hypothetical protein
LOC_Os10g219708/11hypothetical protein
LOC_Os04g296107/11hypothetical protein
LOC_Os02g329005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22210Os.23349.1.S1_x_at1/1111+12263854..12265972hypothetical protein
LOC_Os11g22220OsAffx.447.1.S1_at2/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22220Os.46715.1.S1_x_at1/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22220Os.52609.1.S1_at1/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22230NANA11+12276806..12277944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22240Os.46692.1.S1_at2/1111+12278913..12285271transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g22250Os.25164.1.A1_at11/1111+12287486..12289001expressed protein
LOC_Os11g22260NANA11+12289864..12290604retrotransposon protein, putative, unclassified
LOC_Os11g22270OsAffx.31087.1.S1_at11/1111+12291117..12292470hypothetical protein
LOC_Os11g22280NANA11+12293909..12294871retrotransposon protein, putative, unclassified
LOC_Os11g22290OsAffx.18968.1.S1_at8/1111+12295501..12296862hypothetical protein
LOC_Os11g22300NANA11+12300905..12307042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22310Os.46995.1.S1_x_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.25367.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310Os.46995.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.20628.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25164.1.A1_at--669--8194Chr11:1246841..1246865 (25 bp)
GGAATTACTTAGAGACTCCAAGGTT
LOC_Os11g03320
Os.25164.1.A1_at--609--7834Chr11:1246936..1246960 (25 bp)
GGTACTCCTTAGCTTCAGTTGTTGA
LOC_Os11g03320
Os.25164.1.A1_at--1124--5835Chr11:1246998..1247022 (25 bp)
GACCAGCAGGTTGTAGAAGACTCCT
LOC_Os11g03320
Os.25164.1.A1_at--1144--6934Chr11:1247010..1247034 (25 bp)
GTAGAAGACTCCTTGGTAACAGACA
LOC_Os11g03320
Os.25164.1.A1_at--853--5714Chr11:1247016..1247040 (25 bp)
GACTCCTTGGTAACAGACACCATGG
LOC_Os11g03320
Os.25164.1.A1_at--587--5355Chr11:1247052..1247076 (25 bp)
GAAGATGAATACTTGAAGGCAGAAT
LOC_Os11g03320
Os.25164.1.A1_at--275--10255Chr11:1247183..1247207 (25 bp)
TTTGAAAATTTATGTCCCTTTGTAT
LOC_Os11g03320
Os.25164.1.A1_at--535--775Chr11:1247194..1247218 (25 bp)
ATGTCCCTTTGTATTTTACTCTAAG
LOC_Os11g03320
Os.25164.1.A1_at--512--6755Chr11:1247270..1247294 (25 bp)
GTTCATGGCCAGTTATTTGTTAGCA
NONE
Os.25164.1.A1_at--870--5234Chr11:1247297..1247321 (25 bp)
GAATAACTCATGCATCTGTAACTCT
NONE
Os.25164.1.A1_at--510--3514Chr11:1247309..1247333 (25 bp)
CATCTGTAACTCTGCTATCACTTTA
NONE
Target Sequence 
GGAATTACTTAGAGACTCCAAGGTTAATTNNATGGCAAACGTTNTTGAAGNCNCCATGAAAGAGAAAGAGATTAATGAAG
ATGACCATATGGGNTGGTACTCCTTAGCTTCAGTTGTTGAGGNCACCATGGATCAGCAAGTGGNAGCAGACATCATGGAC
CAGCAGGTTGTAGAAGACTCCTTGGTAACAGACACCATGGAAGAGAGTGATGAAGATGAATACTTGAAGGCAGAATATGA
AAAGGGTGCATTAATCTTNGCTAGAGATGAGGCAAATGCNNTGGAAAGAAAAGAAGNTGAAGCTCGTTATGAAAAATCAC
TTGAAGAGATTAGAGATGAATTTTTGAAAATTTATGTCCCTTTGTATTTTACTCTAAGAAAAAAGTAAATTCAGTTAGAT
AGATAATATATAAATTCGATCAGAATCCAGTTCATGGCCAGTTATTTGTTAGCAAAGAATAACTCATGCATCTGTAACTC
TGCTATCACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25164.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis