Browse Element(s) Details


OsAffx.31087.1.S1_at

Description tigr:9639.m01998
TID=OsAffx.31087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2227011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22220OsAffx.447.1.S1_at2/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22220Os.46715.1.S1_x_at1/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22220Os.52609.1.S1_at1/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22230NANA11+12276806..12277944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22240Os.46692.1.S1_at2/1111+12278913..12285271transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g22250Os.25164.1.A1_at11/1111+12287486..12289001expressed protein
LOC_Os11g22260NANA11+12289864..12290604retrotransposon protein, putative, unclassified
LOC_Os11g22270OsAffx.31087.1.S1_at11/1111+12291117..12292470hypothetical protein
LOC_Os11g22280NANA11+12293909..12294871retrotransposon protein, putative, unclassified
LOC_Os11g22290OsAffx.18968.1.S1_at8/1111+12295501..12296862hypothetical protein
LOC_Os11g22300NANA11+12300905..12307042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22310Os.46995.1.S1_x_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.25367.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310Os.46995.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.20628.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22320NANA11+12314433..12315145retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31087.1.S1_at--415--6671Chr11:12291501..12291525 (25 bp)
GTAGCCGGACGGTGGACGCCAACCT
LOC_Os11g22270
OsAffx.31087.1.S1_at--938--1151Chr11:12291533..12291557 (25 bp)
AGTCACCATGGCGTGGTCGTTGAAG
LOC_Os11g22270
OsAffx.31087.1.S1_at--1155--4091Chr11:12291591..12291615 (25 bp)
CGAACACCGGGAACGCGGGCACTCT
LOC_Os11g22270
OsAffx.31087.1.S1_at--310--1651Chr11:12291646..12291670 (25 bp)
AGCGAGCCATGAGGTTCCAGGTGAA
LOC_Os11g22270
OsAffx.31087.1.S1_at--453--4611Chr11:12291744..12291768 (25 bp)
GCGACGCATGCCTTGGCGATGAAGA
LOC_Os11g22270
OsAffx.31087.1.S1_at--952--5771Chr11:12291830..12292051 (25 bp)
GACGAGCCGACCGAGGTCAGCAAAT
LOC_Os11g22270
OsAffx.31087.1.S1_at--425--5391Chr11:12292053..12292077 (25 bp)
GAAGCACATGCTCATCAAAAACCAC
LOC_Os11g22270
OsAffx.31087.1.S1_at--820--5751Chr11:12292080..12292104 (25 bp)
GACGAGAGATAATAACCCAGTTAGA
LOC_Os11g22270
OsAffx.31087.1.S1_at--584--7351Chr11:12292336..12292360 (25 bp)
GTGAAGAGCCTCGACCCAAAAGAAA
LOC_Os11g22270
OsAffx.31087.1.S1_at--403--2731Chr11:12292386..12292410 (25 bp)
AAGAGCGCACGATGTTATTAAGGGA
LOC_Os11g22270
OsAffx.31087.1.S1_at--835--8171Chr11:12292408..12292432 (25 bp)
GGAACGAAGCATGCACTCAGCCTTA
LOC_Os11g22270
Target Sequence 
GTAGCCGGACGGTGGACGCCAACCTTGCCGCGAGTCACCATGGCGTGGTCGTTGAAGACGGGGGAGACTCCGAGTTGTGC
CGGAGGAGGCCGAACACCGGGAACGCGGGCACTCTGGGGCGCGTGACAGCGCCAGTTGGTGGTGGAGCGAGCCATGAGGT
TCCAGGTGAAGGGCGAGTGACGCCAGTTGCACCTGGGGCAGGAGAAGCCGACGCCGGGGAAGTGGCGCCAAGCGAGCGAA
GGGGCGACGCATGCCTTGGCGATGAAGACGGCGCGGGCGACCGGGAAGCAGGAGGCGATGTAGCGGTAGGTCGTGGCCTG
GGAGAGGCCGACGAGCCGACCGAGGTCAGCAAATGGAAGCACATGCTCATCAAAAACCACATGACGAGAGATAATAACCC
AGTTAGAAATGGGGTCAAAACACCGGGTTTTGGTGGGGTGACGGTTGATGAGATGTGTGGCGGTGTGAAGAGCCTCGACC
CAAAAGAAAGAAGGAAGGCTGGCCTGAAAGAGCAAAGAGCGCACGATGTTATTAAGGGAACGAAGCATGCACTCAGCCTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis