Browse Element(s) Details


OsAffx.18968.1.S1_at

Description tigr:9639.m02000
TID=OsAffx.18968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g222908/11hypothetical protein
LOC_Os05g228903/11hypothetical protein
LOC_Os11g105301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22220OsAffx.447.1.S1_at2/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22220Os.46715.1.S1_x_at1/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22220Os.52609.1.S1_at1/1111+12269137..12273685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22230NANA11+12276806..12277944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22240Os.46692.1.S1_at2/1111+12278913..12285271transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g22250Os.25164.1.A1_at11/1111+12287486..12289001expressed protein
LOC_Os11g22260NANA11+12289864..12290604retrotransposon protein, putative, unclassified
LOC_Os11g22270OsAffx.31087.1.S1_at11/1111+12291117..12292470hypothetical protein
LOC_Os11g22280NANA11+12293909..12294871retrotransposon protein, putative, unclassified
LOC_Os11g22290OsAffx.18968.1.S1_at8/1111+12295501..12296862hypothetical protein
LOC_Os11g22300NANA11+12300905..12307042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22310Os.46995.1.S1_x_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.25367.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310Os.46995.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22310OsAffx.20628.1.S1_at1/1111+12307376..12312954retrotransposon protein, putative, unclassified
LOC_Os11g22320NANA11+12314433..12315145retrotransposon, putative, centromere-specific
LOC_Os11g22330NANA11+12318317..12321514hypothetical protein
LOC_Os11g22336OsAffx.22699.1.S1_x_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified
LOC_Os11g22336Os.52731.1.S1_at1/1111+12321851..12325608retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18968.1.S1_at--641--3791NONE
CTCCGAGGTCGCGAGTTGCATATAT
NONE
OsAffx.18968.1.S1_at--460--4071NONE
CGAGGTCGCGAGTTGCATATATTTA
NONE
OsAffx.18968.1.S1_at--1097--7771NONE
GGTCGCGAGTTGCATATATTTATCA
NONE
OsAffx.18968.1.S1_at--710--46115Chr12:12402045..12402066 (22 bp)
GCGAGTTGCATATATTTATCATCAT
NONE
OsAffx.18968.1.S1_at--597--66715Chr12:12402046..12402070 (25 bp)
GTTGCATATATTTATCATCATAAGG
NONE
OsAffx.18968.1.S1_at--783--399Chr11:12296668..12296692 (25 bp)
ATCATAAGGTTAAACAACAACTGTT
LOC_Os11g22290
OsAffx.18968.1.S1_at--378--137Chr11:12296700..12296724 (25 bp)
ATTCAAGCGCCGTAGCGATCGTGTC
LOC_Os11g22290
OsAffx.18968.1.S1_at--1113--4499Chr11:12296708..12296732 (25 bp)
GCCGTAGCGATCGTGTCGACCATAT
LOC_Os11g22290
OsAffx.18968.1.S1_at--991--69515Chr12:12402106..12402129 (24 bp)
GTAGCGATCGTGTCGACCATATGAC
NONE
OsAffx.18968.1.S1_at--791--16312Chr12:12402107..12402131 (25 bp)
AGCGATCGTGTCGACCATATGACCT
NONE
OsAffx.18968.1.S1_at--870--63912Chr12:12402110..12402134 (25 bp)
GATCGTGTCGACCATATGACCTGGA
NONE
Target Sequence 
CTCCGAGGTCGCGAGTTGCATATATTTATCATCATAAGGTTAAACAACAACTGTTATATGGCATTCAAGCGCCGTAGCGA
TCGTGTCGACCATATGACCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis