Browse Element(s) Details


Os.46692.1.S1_at

Description gb:CA766554
DB_XREF= gi:27548406
DB_XREF=AF53-Rpf_11_O12_T7_048.ab1
CLONE=C0004188
TID=Os.46692.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative TNP2-like transposon protein (OSJNBa0073L01.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3288011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g219805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g033405/11hypothetical protein
LOC_Os04g296205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g222402/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed
LOC_Os02g32870NANA2+19515861..19518461transposon protein, putative, unclassified
LOC_Os02g32880Os.46692.1.S1_at11/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32880OsAffx.26549.1.S1_at1/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32890NANA2+19530487..19532073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32900Os.25164.1.A1_at5/112+19534364..19535887hypothetical protein
LOC_Os02g32910NANA2+19536470..19537240hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_x_at10/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_at9/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.22604.1.S1_x_at2/112+19541528..19542661hypothetical protein
LOC_Os02g32930Os.51859.1.S1_at10/112+19543869..19550278Sodium Bile acid symporter family protein, expressed
LOC_Os02g32940OsAffx.12322.1.S1_at11/112+19553842..19558982hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46692.1.S1_at--623--9795Chr11:1255516..1255540 (25 bp)
TAAGCGGCGTGATCATTTAATTGGA
LOC_Os11g03340
Os.46692.1.S1_at--293--1355Chr11:1255562..1255586 (25 bp)
AGAGATGTACGAGGCCCAGCACTTA
LOC_Os11g03340
Os.46692.1.S1_at--1070--6214Chr11:1255572..1255596 (25 bp)
GAGGCCCAGCACTTAGCAAAGCTGA
LOC_Os11g03340
Os.46692.1.S1_at--312--1614Chr11:1255591..1255615 (25 bp)
AGCTGAATTGCATGCTAGACTTCGA
LOC_Os11g03340
Os.46692.1.S1_at--928--3694Chr11:1255605..1255629 (25 bp)
CTAGACTTCGAGCAACAGAGAGGGA
LOC_Os11g03340
Os.46692.1.S1_at--100--5315Chr11:1255917..1255941 (25 bp)
GAAGGGTTGATTCCTCGTAAAACAT
NONE
Os.46692.1.S1_at--564--3135Chr11:1255979..1256003 (25 bp)
AATTTTGTTCACCATAAGTTCTAGT
NONE
Os.46692.1.S1_at--173--8295Chr11:1256017..1256041 (25 bp)
GGCATCATGTTGGTGCTGTCTGAAT
NONE
Os.46692.1.S1_at--962--155Chr11:1256071..1256095 (25 bp)
ATTATTTTGTATTTGCACCGAGTAA
NONE
Os.46692.1.S1_at--521--1794Chr11:1256087..1256111 (25 bp)
ACCGAGTAAACACGTGGCTGCTACA
NONE
Os.46692.1.S1_at--435--8333Chr11:1256102..1256121 (20 bp)
GGCTGCTACAGGACAACTCATTGGT
NONE
Target Sequence 
TAAGCGGCGTGATCATTTAATTGGATTTGGTGGTGGTGTCAAAGCAAGAGATGTACGAGGCCCAGCACTTAGCAAAGCTG
AATTGCATGCTAGACTTCGAGCAACAGAGAGGGAAAACAAAATGCTTCGAGAAGAAAATAGTNAGGTTGTTGAGTCTGTA
AATCAAATGCAGAATGAATGGGCTGAGATGAGGAGAGANTATTATGCTANCTGTGAAAATAGAAGTGACACTNGCTCACA
AAGACNTCATGAGAGGATCCACAGTGAAAGAGATGACTATGATGCAAATGAAGATGGTACCTGCTGATGAAGGGTTGATT
CCTCGTAAAACATGAAGGAATAGTCCATTGCAATTCCAATTTCAGATTGAAATTTTGTTCACCATAAGTTCTAGTGATTG
TTTAATTAGGCATCATGTTGGTGCTGTCTGAATAATTTATCTAGTTGGATGCAGTGAACATTATTATTTTGTATTTGCAC
CGAGTAAACACGTGGCTGCTACAGGACAACTCATTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis