Browse Element(s) Details


Os.8250.1.S1_at

Description gb:AK107488.1
DB_XREF= gi:32992697
TID=Os.8250.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C11, full insert sequence.
FL= gb:AK107488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g328504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed
LOC_Os02g32870NANA2+19515861..19518461transposon protein, putative, unclassified
LOC_Os02g32880Os.46692.1.S1_at11/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32880OsAffx.26549.1.S1_at1/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8250.1.S1_at--972--9031Chr02:19497875..19497899 (25 bp)
TGCACCGACTGTCTGCGTCATCAGC
LOC_Os02g32850
Os.8250.1.S1_at--395--4671Chr02:19498211..19498231 (21 bp)
GCGTGGCGATGGACAGTCTGAACAC
LOC_Os02g32850
Os.8250.1.S1_at--664--8351Chr02:19498286..19498310 (25 bp)
GGCGGCCGTGCTTCTCAACCAGGAG
LOC_Os02g32850
Os.8250.1.S1_at--226--4171Chr02:19498435..19498459 (25 bp)
CGCCTCCGGTGCAGGACAAGTCAGC
LOC_Os02g32850
Os.8250.1.S1_at--376--2851Chr02:19498452..19498476 (25 bp)
AAGTCAGCCTCCAAGTCCAAGTAGG
NONE
Os.8250.1.S1_at--688--3611Chr02:19498500..19498524 (25 bp)
CTTGGTCACAGAGAAGCGGATGCTT
NONE
Os.8250.1.S1_at--118--1631Chr02:19498514..19498538 (25 bp)
AGCGGATGCTTGCTTGAGCCACTGT
NONE
Os.8250.1.S1_at--39--8931Chr02:19498528..19498552 (25 bp)
TGAGCCACTGTGGATGCATGGTGAT
NONE
Os.8250.1.S1_at--1107--9791Chr02:19498585..19498609 (25 bp)
TAACTTTAGCCGTGGATGTCAACTA
NONE
Os.8250.1.S1_at--1125--4751Chr02:19498637..19498661 (25 bp)
GCTGAATTCTGGATTCTCTGCTCAC
NONE
Os.8250.1.S1_at--859--3771Chr02:19498652..19498676 (25 bp)
CTCTGCTCACTGGTATGTAGTCTTA
NONE
Target Sequence 
TGCACCGACTGTCTGCGTCATCAGCTCCGGCCACGGCGTGGCGATGGACAGTCTGAACACGAAGCTGTACCTGCAGAACT
GCTACATGCTCAAGGAGAACGAGCGGCTGCNCAAGGCGGCCGTGCTTCTCAACCAGGAGAACCAGGCCCTGCTCTNCGAG
CTCAAGCACCGNCTCGNCAGGTCGCCGTCGNCGGCCGCCGCGGCACCCGGCGTCGCCAACGACAGCAAGAACGCCGCCGC
CGCCGCCGGCCGCCACGCTGGCCCGCCTCCGGTGCAGGACAAGTCAGCCTCCAAGTCCAAGTAGGCTATAGCCACGAGCT
CNCAGCTGCTTGGTCACAGAGAAGCGGATGCTTGCTTGAGCCACTGTGGATGCATGGTGATGGTGCTGCAGGTGTTTGGG
GGTGTGTGTGTTTTAACTTTAGCCGTGGATGTCAACTAGGAAGGCGTTTTTAATTACTTTCAGTTGCTGAATTCTGGATT
CTCTGCTCACTGGTATGTAGTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis