Browse Element(s) Details


OsAffx.22659.1.S1_x_at

Description gb:NM_184980.1
DB_XREF= gi:34897045
TID=OsAffx.22659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010I09.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g118742/11expressed protein
LOC_Os11g225801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g328141/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11830Os.35344.18.S1_x_at10/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830Os.35344.3.S1_x_at9/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830OsAffx.22940.5.S1_x_at3/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11840Os.50168.1.S1_at11/113+6182247..6183110expressed protein
LOC_Os03g11850NANA3+6186002..6190381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g11860NANA3+6191493..6195746hypothetical protein
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0016531molecular_functioncopper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22659.1.S1_x_at--26--96712Chr11:918567..918592 (25 bp)
TCAGCCGATCCGGTCGTGCCGAGGT
NONE
OsAffx.22659.1.S1_x_at--1039--7852Chr03:32250730..32250754 (25 bp)
GGTTTCTCCGGGACACCGTGCGACG
NONE
OsAffx.22659.1.S1_x_at--419--7012Chr03:32250772..32250796 (25 bp)
GTACACCGGAATGATGAGGGAGAAC
NONE
OsAffx.22659.1.S1_x_at--54--18718Chr11:17748355..17748379 (25 bp)
ACGAGAGGGAGCGAGCCAACGGCTT
NONE
OsAffx.22659.1.S1_x_at--338--10831Chr03:32250818..32250842 (25 bp)
TTGGATTCACCGGATGGAGTTCGAC
NONE
OsAffx.22659.1.S1_x_at--764--8571Chr03:32250819..32250843 (25 bp)
TGGATTCACCGGATGGAGTTCGACG
NONE
OsAffx.22659.1.S1_x_at--656--531Chr03:32250865..32250889 (25 bp)
ATCCGGCGGCGAGAGAAGATGGAAA
NONE
OsAffx.22659.1.S1_x_at--1144--832Chr10:16672378..16672400 (23 bp)
ATGGAAACGGCGACGGTGCGACGGG
NONE
OsAffx.22659.1.S1_x_at--567--7771Chr03:32250897..32250921 (25 bp)
GGTGCGACGGGAGATCAGTTCGGGC
NONE
OsAffx.22659.1.S1_x_at--494--67127Chr11:12506645..12506668 (24 bp)
GTTCGGGCGAGCTAGAGCATCTACG
LOC_Os11g22580
OsAffx.22659.1.S1_x_at--764--7577Chr12:27337685..27337860 (25 bp)
GGGCGAGCTAGAGCATCTACGTGAC
NONE
Target Sequence 
TCAGCCGATCCGGTCGTGCCGAGGTGGCACCGACGTGGCGCCTACGTGGCTGCCACGCGGGCCGGCTGGAGGAAGACGAA
GGCGCCGGCTGCGAATGGACGGCGGGCAGCGGCGGTTTCTCCGGGACACCGTGCGACGACGAGGGGCGACGGGGTGTACA
CCGGAATGATGAGGGAGAACGAGAGGGAGCGAGCCAACGGCTTGGATTCACCGGATGGAGTTCGACGGCGGCGGATTGCG
GCGGCGGCATCCGGCGGCGAGAGAAGATGGAAACGGCGACGGTGCGACGGGAGATCAGTTCGGGCGAGCTAGAGCATCTA
CGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22659.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis