Browse Element(s) Details


OsAffx.25095.4.S1_x_at

Description gb:NM_193091.1
DB_XREF= gi:34913265
GEN=P0519E12.10
TID=OsAffx.25095.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0519E12.10 (P0519E12.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g118743/11expressed protein
LOC_Os11g225803/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11830Os.35344.18.S1_x_at10/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830Os.35344.3.S1_x_at9/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830OsAffx.22940.5.S1_x_at3/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11840Os.50168.1.S1_at11/113+6182247..6183110expressed protein
LOC_Os03g11850NANA3+6186002..6190381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g11860NANA3+6191493..6195746hypothetical protein
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25095.4.S1_x_at--962--5091Chr07:26195237..26195261 (25 bp)
GCACGCAGCGCGCACTAGGGTTTGG
NONE
OsAffx.25095.4.S1_x_at--749--7575Chr12:27337660..27337683 (24 bp)
GGGCGATCTACAGCGATGCAGGCAA
NONE
OsAffx.25095.4.S1_x_at--679--454Chr07:26195515..26195539 (25 bp)
ATCTACAGCGATGCAGGCAAGGGCG
NONE
OsAffx.25095.4.S1_x_at--385--65730Chr11:12506643..12506667 (25 bp)
GATTCGGGCGAGCTAGAGCATCTAC
LOC_Os11g22580
OsAffx.25095.4.S1_x_at--829--83733Chr11:12506649..12506673 (25 bp)
GGCGAGCTAGAGCATCTACGCGACT
LOC_Os11g22580
OsAffx.25095.4.S1_x_at--493--37135Chr11:27052240..27052264 (25 bp)
CTAGAGCATCTACGCGACTCCGGGA
NONE
OsAffx.25095.4.S1_x_at--45--57110Chr10:2383030..2383054 (25 bp)
GACTCCGGGAATCCGTTTCTAGCGT
NONE
OsAffx.25095.4.S1_x_at--882--42312Chr12:21917607..21917627 (21 bp)
CCGTTTCTAGCGTCGGATTGGACGA
NONE
OsAffx.25095.4.S1_x_at--628--6611Chr07:26195735..26195759 (25 bp)
GATTGGACGAAGACACTACGAGAGA
NONE
OsAffx.25095.4.S1_x_at--645--2751Chr07:26195744..26195768 (25 bp)
AAGACACTACGAGAGAGGCCAGCAA
NONE
OsAffx.25095.4.S1_x_at--756--1351Chr07:26195755..26195779 (25 bp)
AGAGAGGCCAGCAACGTGCGGGTGC
NONE
Target Sequence 
GCACGCAGCGCGCACTAGGGTTTGGGGGAGGGACGCGGTGCACGCGCGCGACTCGCGCCTCACGGCTCGCGGTGGACCGC
GTGCACGAGCGGGGCGGAGGGGAGCGGCGGACCGGGGTCAGCTTGACCCGGTCACGGCCGAGGTGGCGCCGACGTGGCGC
CTACGTGGCTGCCACGCGGGTCGGCGGGAGGAAGACGACGACGTTGGCCGGAACGGACGGCGGATGGCGGCGGCGATCGG
CGGGGCGATCTACAGCGATGCAGGCAAGGGCGAGCGCACCGGGAGGTTGCACGGGACGAGGGGAGACGAGCCAACGGCTC
GGATTCGCCGGAGGGGGCTCGACGGCGGTGGATTGTGGCGGCGGCAACCGGCGGCGAGGGAAGGGGGAAACAGCGACGGC
GCGACGGGAGATCGATTCGGGCGAGCTAGAGCATCTACGCGACTCCGGGAATCCGTTTCTAGCGTCGGATTGGACGAAGA
CACTACGAGAGAGGCCAGCAACGTGCGGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25095.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis