Browse Element(s) Details


Os.50168.1.S1_at

Description gb:AK119980.1
DB_XREF= gi:37989603
TID=Os.50168.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-F06, full insert sequence.
FL= gb:AK119980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1184011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11810NANA3+6158258..6158530hypothetical protein
LOC_Os03g11819NANA3+6161496..6162931hypothetical protein
LOC_Os03g11830Os.35344.18.S1_x_at10/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830Os.35344.3.S1_x_at9/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830OsAffx.22940.5.S1_x_at3/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11840Os.50168.1.S1_at11/113+6182247..6183110expressed protein
LOC_Os03g11850NANA3+6186002..6190381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g11860NANA3+6191493..6195746hypothetical protein
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50168.1.S1_at--626--3751Chr03:6182580..6182604 (25 bp)
CTCTTCGTACGATGGCGGGTGTGAT
LOC_Os03g11840
Os.50168.1.S1_at--950--5171Chr03:6182643..6182667 (25 bp)
GCAAGATTCGCTTCGTCGCCAGCAG
LOC_Os03g11840
Os.50168.1.S1_at--568--1511Chr03:6182703..6182727 (25 bp)
AGCAGCGTCTGCTCGACATCAGGCG
LOC_Os03g11840
Os.50168.1.S1_at--538--9631Chr03:6182733..6182757 (25 bp)
TCAGTGGTCTCGTCGAAGCACCTGT
LOC_Os03g11840
Os.50168.1.S1_at--324--2731Chr03:6182748..6182772 (25 bp)
AAGCACCTGTTCACCTTTGAGCGTT
LOC_Os03g11840
Os.50168.1.S1_at--417--7691Chr03:6182778..6182802 (25 bp)
GGTGAATGTTTTGTCCGGTAGCAGT
LOC_Os03g11840
Os.50168.1.S1_at--1116--6951Chr03:6182795..6182819 (25 bp)
GTAGCAGTGTGGTTTCACCTTCGAC
LOC_Os03g11840
Os.50168.1.S1_at--1122--1731Chr03:6182811..6182835 (25 bp)
ACCTTCGACTCATGTGCAGTAGTTT
LOC_Os03g11840
Os.50168.1.S1_at--365--6491Chr03:6182844..6182868 (25 bp)
GATAGGCCTGAGTTTCATCTAATGG
LOC_Os03g11840
Os.50168.1.S1_at--1096--271Chr03:6182873..6182897 (25 bp)
ATAGGCGGAGCACATTCTCACCTTA
LOC_Os03g11840
Os.50168.1.S1_at--175--2911Chr03:6183014..6183038 (25 bp)
AAGGATCCCGTAATGTTCAATTGTA
LOC_Os03g11840
Target Sequence 
CTCTTCGTACGATGGCGGGTGTGATCGGAGGGAACTTCCGCAACCGCGCCTACGTCGTCGTCCGCAAGATTCGCTTCGTC
GCCAGCAGCGCCCGCAACCACTCCATGGCGGCGGCGAGGCTCCAGCAGCGTCTGCTCGACATCAGGCGTCGCCTCAGTGG
TCTCGTCGAAGCACCTGTTCACCTTTGAGCGTTTTTAGGGTGAATGTTTTGTCCGGTAGCAGTGTGGTTTCACCTTCGAC
TCATGTGCAGTAGTTTTGTTTGATGATAGGCCTGAGTTTCATCTAATGGTTGCATAGGCGGAGCACATTCTCACCTTAGG
AGGAGTATATAGGTACTATATGAAATACAGATAGAATCCTGCATATATTAGGAGTAAACATAGAGGAGATTCGAATTTCG
AAATGCTATATGAATTGTGGAATGGTATATCGGAAAGGATCCCGTAATGTTCAATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis