Browse Element(s) Details


OsAffx.25095.3.S1_x_at

Description gb:NM_184153.1
DB_XREF= gi:34895397
GEN=P0445D12.6
TID=OsAffx.25095.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445D12.6 (P0445D12.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g225803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g118743/11expressed protein
LOC_Os01g190101/11transposon protein, putative, unclassified
LOC_Os02g485101/11hypothetical protein
LOC_Os01g487801/11transposon protein, putative, unclassified
LOC_Os12g413401/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22550OsAffx.22947.1.S1_x_at1/1111+12484067..12489870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22560NANA11+12490620..12492519retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22570OsAffx.22848.4.S1_at2/1111+12498053..12504003retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22570OsAffx.22848.4.S1_x_at1/1111+12498053..12504003retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22570OsAffx.22848.3.S1_x_at1/1111+12498053..12504003retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22580OsAffx.25095.3.S1_x_at3/1111+12506240..12514340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22580OsAffx.25095.4.S1_x_at3/1111+12506240..12514340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22580OsAffx.22659.1.S1_x_at1/1111+12506240..12514340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22580Os.9332.2.S1_x_at1/1111+12506240..12514340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22580OsAffx.29376.1.S1_x_at1/1111+12506240..12514340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22580OsAffx.31892.2.S1_x_at1/1111+12506240..12514340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22590Os.40288.1.S1_x_at1/1111+12514955..12516765retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g22600Os.41248.4.S1_x_at1/1111+12516940..12521602retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g22610OsAffx.15648.1.S1_at1/1111+12523360..12525069Zinc knuckle family protein
LOC_Os11g22620Os.52633.1.S1_at1/1111+12526246..12530721retrotransposon protein, putative, LINE subclass
LOC_Os11g22620Os.48015.1.A1_x_at1/1111+12526246..12530721retrotransposon protein, putative, LINE subclass
LOC_Os11g22630NANA11+12532645..12534905hypothetical protein
LOC_Os11g22640NANA11+12537985..12540404retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25095.3.S1_x_at--386--65730Chr11:12506643..12506667 (25 bp)
GATTCGGGCGAGCTAGAGCATCTAC
LOC_Os11g22580
OsAffx.25095.3.S1_x_at--830--83733Chr11:12506649..12506673 (25 bp)
GGCGAGCTAGAGCATCTACGCGACT
LOC_Os11g22580
OsAffx.25095.3.S1_x_at--492--37135Chr11:27052240..27052264 (25 bp)
CTAGAGCATCTACGCGACTCCGGGA
NONE
OsAffx.25095.3.S1_x_at--44--57110Chr10:2383030..2383054 (25 bp)
GACTCCGGGAATCCGTTTCTAGCGT
NONE
OsAffx.25095.3.S1_x_at--1011--3032Chr07:24690464..24690488 (25 bp)
AATCCGTTTCTAGCGTCAGATTGGA
NONE
OsAffx.25095.3.S1_x_at--629--66112Chr03:1924053..1924195 (25 bp)
GATTGGACGGAGACACTACGAGAGA
NONE
OsAffx.25095.3.S1_x_at--123--21710Chr12:25586845..25586869 (25 bp)
ACACTACGAGAGAGGCCGGCGACGT
NONE
OsAffx.25095.3.S1_x_at--227--7472Chr03:223552..223572 (21 bp)
GTGTGGGCGCTACCGAGCACGGGCG
NONE
OsAffx.25095.3.S1_x_at--956--3251Chr01:1242811..1242831 (21 bp)
CAACGGGCGGTCAAAGAGCAAGCTG
NONE
OsAffx.25095.3.S1_x_at--575--3974Chr02:28201308..28201359 (25 bp)
CGGTCACGGCCAAAACGGCGATAGG
NONE
OsAffx.25095.3.S1_x_at--402--2798Chr12:25587720..25587743 (24 bp)
AAGAGGGAGAGCTCGGCTCGGCGTC
LOC_Os12g41340
Target Sequence 
GATTCGGGCGAGCTAGAGCATCTACGCGACTCCGGGAATCCGTTTCTAGCGTCAGATTGGACGGAGACACTACGAGAGAG
GCCGGCGACGTGTGGGCGCTACCGAGCACGGGCGGCGACGGCGGCGAGCACACAGCGAGCGGCGGCAACGGGCGGTCAAA
GAGCAAGCTGGCGCTCGGCGGTCACGGCCAAAACGGCGATAGGGAGGATGACGCCGGCGGGGAGAAAAAGGAAGAAAGGA
AGGGGGAAAGGAGACTTGCCTCTTGCCACTTTGGGAAAAGAAGGAAGGAGAGAGAGGGCGACGAGGCAGTGGGAGGAGGA
GCTCTGCCTCCAATCCTTGGGAGCATGCGCGGTGGGCGGCAGGCGCTGACGGCGGCGGCGACTGGCCGGTCGGCCACCAC
GGCGCGCGCGCGCGCGGGAAGCAATGGCGCGGGGGATTCAAAACTCGGGGGCGGGGCTCGCCGGGAAGAGAGAGACGGGG
AGGGAGAGCAGGAGAACGAGAAAGAGGGAGAGCTCGGCTCGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25095.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis