Browse Element(s) Details


Os.52633.1.S1_at

Description gb:AK068428.1
DB_XREF= gi:32978446
TID=Os.52633.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155D07, full insert sequence.
FL= gb:AK068428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1243011/11expressed protein
LOC_Os04g263405/11retrotransposon protein, putative, unclassified
LOC_Os11g226201/11retrotransposon protein, putative, LINE subclass
LOC_Os05g519101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12400NANA4+6825012..6828344transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12410OsAffx.5954.3.S1_x_at4/114+6832842..6834317Zinc knuckle family protein
LOC_Os04g12410OsAffx.5954.2.S1_at1/114+6832842..6834317Zinc knuckle family protein
LOC_Os04g12410OsAffx.5954.1.S1_x_at1/114+6832842..6834317Zinc knuckle family protein
LOC_Os04g12420OsAffx.5954.5.S1_x_at4/114+6838346..6843689retrotransposon protein, putative, unclassified
LOC_Os04g12420OsAffx.25503.1.S1_at1/114+6838346..6843689retrotransposon protein, putative, unclassified
LOC_Os04g12430Os.52633.1.S1_at11/114+6849675..6852876expressed protein
LOC_Os04g12440Os.1189.1.S1_at1/114+6853863..6858147retrotransposon protein, putative, unclassified
LOC_Os04g12450NANA4+6859876..6860172hypothetical protein
LOC_Os04g12460OsAffx.13983.1.S1_at11/114+6870603..6873995Leucine Rich Repeat family protein, expressed
LOC_Os04g12470Os.50274.1.S1_a_at1/114+6875001..6875929NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52633.1.S1_at--511--1412Chr04:15335457..15335481 (25 bp)
AGACAAGTGTTTGGGCTCCGGATTC
LOC_Os04g26340
Os.52633.1.S1_at--156--8651Chr04:6852174..6852198 (25 bp)
TGGGCTCCGGATTCAACAAAGTCTG
LOC_Os04g12430
Os.52633.1.S1_at--552--8432Chr04:6852215..6852239 (25 bp)
GGCCTAGACCCAAGCTGCTATGGAA
LOC_Os04g12430
Os.52633.1.S1_at--1082--2831Chr04:6852238..6852262 (25 bp)
AAGTACTTGATGTCATGCCCTTGTC
LOC_Os04g12430
Os.52633.1.S1_at--1128--9652Chr04:6852277..6852301 (25 bp)
TCAGCCCAGTTTGTGAAGCACCAGC
LOC_Os04g12430
Os.52633.1.S1_at--96--1571Chr04:6852299..6852323 (25 bp)
AGCTCTTCCTGTGTTACCTAAGGCT
LOC_Os04g12430
Os.52633.1.S1_at--612--2111Chr04:6852624..6852648 (25 bp)
ACATGTGCGGCTTAACTCCTGAGGA
LOC_Os04g12430
Os.52633.1.S1_at--1069--1454Chr04:15335998..15336022 (25 bp)
AGAAGATGCCCAGGCCTGACATGGA
LOC_Os04g26340
Os.52633.1.S1_at--1009--8771Chr04:6852735..6852759 (25 bp)
TGTTTTAGTAGACCTGTACTTCCCT
LOC_Os04g12430
Os.52633.1.S1_at--344--8512Chr04:6852787..6852811 (25 bp)
TGGAACTTCCCTTTTAATTATCATG
LOC_Os04g12430
Os.52633.1.S1_at--411--3231Chr04:6852830..6852854 (25 bp)
CAAGAGCTTTTCAGACTTTGTCATA
LOC_Os04g12430
Target Sequence 
AGACAAGTGTTTGGGCTCCGGATTCAACAAAGTCTGATGTTGGCCCCCTGGAGGCCTAGACCCAAGCTGCTATGGAAGTA
CTTGATGTCATGCCCTTGTCTATTCAGCCTCCCTTCAGCCCAGTTTGTGAAGCACCAGCTCTTCCTGTGTTACCTAAGGC
TCCAATTAAGAAAAGAGATGTCAAAACTTTGCTTTATAACCCTTACAGGAGGCAGAGTGCAAGGTTGCAGCAGAATAAGG
AGGAAGCAGAACTGCAAGTGGATCCCAGAATGGACATTGGCAAGCCAAGGGGTAAATCTGCAAAGAAATTGAAAGAGCTT
GCAGGCTTGCAGATGGGAGTGGACATGTGCGGCTTAACTCCTGAGGAGGAAGTTGAATCCAGCATGGGGAGTGAGAGAAG
AAAGAAGATGCCCAGGCCTGACATGGAGGAAAAATGATTTTAGTTTTCAGATGTGTTTTAGTAGACCTGTACTTCCCTTT
TAATTATCATGTAAGGGTCTGTATTTGGAACTTCCCTTTTAATTATCATGTAAGGGTCTGTATTTGGACAAGAGCTTTTC
AGACTTTGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis