Browse Element(s) Details


OsAffx.13983.1.S1_at

Description tigr:9632.m02475
TID=OsAffx.13983.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1246011/11Leucine Rich Repeat family protein, expressed
LOC_Os04g2635011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12430Os.52633.1.S1_at11/114+6849675..6852876expressed protein
LOC_Os04g12440Os.1189.1.S1_at1/114+6853863..6858147retrotransposon protein, putative, unclassified
LOC_Os04g12450NANA4+6859876..6860172hypothetical protein
LOC_Os04g12460OsAffx.13983.1.S1_at11/114+6870603..6873995Leucine Rich Repeat family protein, expressed
LOC_Os04g12470Os.50274.1.S1_a_at1/114+6875001..6875929NA
LOC_Os04g12480Os.14949.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12480OsAffx.3776.1.S1_at11/114+6882675..6889469pumilio/Puf RNA-binding domain-containing protein, putative, expressed
LOC_Os04g12490NANA4+6890584..6891322retrotransposon protein, putative, unclassified
LOC_Os04g12499Os.27591.1.A1_at11/114+6893080..6894617amino acid transporter family protein, putative, expressed
LOC_Os04g12508NANA4+6895066..6895785amino acid transporter family protein, putative
LOC_Os04g12520Os.41695.15.S1_s_at11/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.5.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.2.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.3.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.4.S1_x_at1/114+6896746..6903530transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13983.1.S1_at--139--332Chr04:15347516..15347540 (25 bp)
ATACATCTGGATTCCTGTCCTAGGC
LOC_Os04g26350
OsAffx.13983.1.S1_at--200--8712Chr04:15347501..15347525 (25 bp)
TGTCCTAGGCTCATCCATGTACTTC
LOC_Os04g26350
OsAffx.13983.1.S1_at--108--6012Chr04:15347450..15347474 (25 bp)
GAGACCATTCAGATCCTGTACTGCA
LOC_Os04g26350
OsAffx.13983.1.S1_at--1041--1972Chr04:15347431..15347455 (25 bp)
ACTGCACCAGCCTCATATATGTTTT
LOC_Os04g26350
OsAffx.13983.1.S1_at--90--10112Chr04:15347414..15347438 (25 bp)
TATGTTTTCCCTTTGAACACAGCAA
LOC_Os04g26350
OsAffx.13983.1.S1_at--91--3852Chr04:15347330..15347354 (25 bp)
CTGCATGAGCTTCCCAGCTTGAAAG
LOC_Os04g26350
OsAffx.13983.1.S1_at--1108--2252Chr04:15347290..15347314 (25 bp)
AAATAATGTCAGCTCCCATGCTGGA
LOC_Os04g26350
OsAffx.13983.1.S1_at--305--6932Chr04:15347242..15347266 (25 bp)
GTAGTCTTAGACACCTGCCTGACGT
LOC_Os04g26350
OsAffx.13983.1.S1_at--442--5432Chr04:15347204..15347228 (25 bp)
GAACCAAGACCCATAGTATACTGTG
LOC_Os04g26350
OsAffx.13983.1.S1_at--499--3292Chr04:15347073..15347097 (25 bp)
CAAAGGCTCTATTCTCAGGTCAAAT
LOC_Os04g26350
OsAffx.13983.1.S1_at--69--3072Chr04:15347051..15347075 (25 bp)
AATCTATCCACATACCTCTATAAGC
LOC_Os04g26350
Target Sequence 
ATACATCTGGATTCCTGTCCTAGGCTCATCCATGTACTTCCCTTGTCCAACAACTTACCAAGCTTGGAGACCATTCAGAT
CCTGTACTGCACCAGCCTCATATATGTTTTCCCTTTGAACACAGCAAACTCCAAGGGGACAGTAAGCAATGATGCTATTG
ATTTCCCAAAGCTGAAGCACGTCCACCTGCATGAGCTTCCCAGCTTGAAAGGGATATGTGAGGCAAAAATAATGTCAGCT
CCCATGCTGGAGNCCATCNTGATCAGGGGCTGNTGTAGTCTTAGACACCTGCCTGACGTCNAAGGATTNCATGAACCAAG
ACCCATAGTATACTGTGAGAAGGATTGGTGGGATAACCTAGNGTGGCCTCNGAAAGAAGGTGGCTATGATCAGTCATTGC
TNTACAAGCGGCAGTCAGCGNAATACTATAAGAAGGCCTTGNCCAAAGGCTCTATTCTCAGGTCAAATCTATCCACATAC
CTCTATAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis